Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4887g00004 ATGGATAAGGGACCTCCACCTAGCCTTTTTGTTAATGACGGTTCGTTCATGGAGAGGTTCAAACAGCTTCAACAAGAGCAGGAGAAGGGGAAGAATGCCAAATTAGAGGATTCTAAACCAATTAAAGTTGTTTCAGGGCCGCTGACTCCTAGTCCCAACATTAGTAAGGCTAATGATGCGCGCAAAACTTTCCAGGCTGGTTCCAGTGGCAAACTTGCTTTCAGTTTAAAACAAAAGTCAAAGCTAGTGCCGCCTCCTGTTAAGTTGGCTGATGAAGATGAAGAAGAAATGGATGCTGGAGATGTTTCAAATGATGCACCACCAAAACGGCAAAAATTGGGTGAGGAGGATGGCATTGAGCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTATGGTGAAGAAAGTTGCTGACAAGCTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACCCGCCAAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAGATGTGCTGACTACAAATATTATGAACATCGGCTTGCTCAAGAGGAAAAGGCCCTTGCGCAGTCCAGGGAACCACAGGCTTATCATAATGGGGGTACAAGCATTTCATCTTCCAGACCAACAAATGGCCCTCAGAGATCATCTCAGCAGAATTCAACTTACCAAATCCCTGCTTCTGCTTTATATGATAGTGCTGAAGTACCAAGGGCTTCTGGATCTTCAGTTCAAGCATTATCAGTTGGAAGCACTGATGAGCCCAGTGGATTGTCAAATGCTGATTCTTTAGCGTTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAAAAGTTCAGGCAACCTAAGCACTCAAAAGATGAGATGCCTCCTCCTGCTTCTCTTCAAGCTTCTGGGAAAAAAGGCCATCACATGGGTGATTATATTCCCCTGGAAGAACTTGAAAAGTTTATGGCTAGCTGTAATGACGCAGCAGCTCTGAAACATGCAAAGGAGAGTGCAGAGAGGGCTAAAATCCAGGCTGATAATGTGGGCCACAAGCTCTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGCCTAGGCAGCTCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGCAATGTTAAGAAAGATAACTTGGGGGTTGGTGCTGTCCAACCTGGGGAGGTGACTGCTGACGATGACATATATGAGCAGTATAAAAAGCGGATGATGCTTGGCTACCGTCATAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1299 0.4465 MDKGPPPSLFVNDGSFMERFKQLQQEQEKGKNAKLEDSKPIKVVSGPLTPSPNISKANDARKTFQAGSSGKLAFSLKQKSKLVPPPVKLADEDEEEMDAGDVSNDAPPKRQKLGEEDGIEQSSRQLDVAPPSPSDPMVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCADYKYYEHRLAQEEKALAQSREPQAYHNGGTSISSSRPTNGPQRSSQQNSTYQIPASALYDSAEVPRASGSSVQALSVGSTDEPSGLSNADSLALMEFYMKKAAQEEKFRQPKHSKDEMPPPASLQASGKKGHHMGDYIPLEELEKFMASCNDAAALKHAKESAERAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGNVKKDNLGVGAVQPGEVTADDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 23 38 - -
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 193 233 - -
Gabi4887g00004 432 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 202 233 - -
Gabi4887g00004 432 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 23 141 - -
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 152 171 - -
Gabi4887g00004 432 SUPERFAMILY Surp module (SWAP domain) 121 192 IPR035967 GO:0003723|GO:0006396
Gabi4887g00004 432 SMART G-patch_5 347 394 IPR000467 GO:0003676
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 48 75 - -
Gabi4887g00004 432 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 62 432 IPR040169 -
Gabi4887g00004 432 Gene3D Surp module 113 197 IPR035967 GO:0003723|GO:0006396
Gabi4887g00004 432 Pfam G-patch domain 350 393 IPR000467 GO:0003676
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 102 122 - -
Gabi4887g00004 432 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Gabi4887g00004 432 ProSiteProfiles G-patch domain profile. 349 396 IPR000467 GO:0003676
Gabi4887g00004 432 MobiDBLite consensus disorder prediction 284 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4887g00004 345 432 C2H2 Transcription Factor Family AT5G26610 33.981 1.87e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4887g00004 K13096 - gmx:100786213 701.819