Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4887g00003 ATGAGTGTTGTGTATAGTCATTCTCTCAAGTACTCTGAAGGGGAAATAAGAAGAAACCCAGAAATGGATTCAAATATTGGTCATCCACAACAACATTGTCACCAGCAAAATTCTGCACTATTGCGGTACCGTTCTGCTCCAAGTTCATTGCTGAATAGCCTTGTGGATACCAGCATTGGATGTGTTAATGAGGAAGCTTTCAAAAGTGAGGATCCTCACCATTATCATCCTTCTACAAGTTCAGAAATGGAAACCATGTTGGCCAAGTTGTTTCCATCCAACATTGGGTTGAACAATTCGGAACCTTTGTATGAGTTTGGAGACAAGCCAGTGAAGCAAGAAATAAGGGACGCAGTTTCACAAGGACCACAACACAATGGTTACTCTTATGGTTCTCAGGCTCAGCTAATTTACCAACCTCACCAAATTCAAGGCTTGTCAAATGGTTCTTTAGGTGCTTCTGGGAATAACTTTGATGGTTCATTCAGTGCAGTGAGTTCCATGGCTTCAGATAATTCCACAGAAACTAAAATGGGTTCCAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTATTCAGTTGATAATGGTTTAGCAGCATTGAGAGAGGTAGGAAGTTTTAGAGCCTGTGATGTCTCAAATGGACAAGCTACTACATCAACTAGTGGGTTGCATGGTACTTTGAACATGTCATCTAGGCCATCCTCTTGCTCTATAAGAATGCCACAAATTGTTGAAAATGGGAATGAAGGGATGGAAGCAAATTGTGTTGAAAGTAGAAACCAGGGAAATAATAATGGCAGCAGTAAATGTTACATGCCTAGCTTCACCAGTGACTTCTGGGATGGTTCTTCATTCAGTGCCCCAAAAACAGAAAGTAACAATAGTGAAATCATATTTTCCACTTCAAATGCTTTGGAAACTCAGGATGCAGACTTTGGATATCATAAACATGGTTTGACCCACCATTTGAGTCTTCCTAGCTCTTCTACTAAGATGGCTAGCATGGATAATTTTTTTCACATTCAAGGATCTGTTCCATGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGATCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATGTGGCTGTGGAGTACATTAAAGACCTGCAGAAACAAGTTAAGGTACTCACAGATACTAGGGCAAAGTGCACATGTACAAATAATCAGAAGCAATACTCTAGACCTTGTGCCTGA 1329 0.4048 MSVVYSHSLKYSEGEIRRNPEMDSNIGHPQQHCHQQNSALLRYRSAPSSLLNSLVDTSIGCVNEEAFKSEDPHHYHPSTSSEMETMLAKLFPSNIGLNNSEPLYEFGDKPVKQEIRDAVSQGPQHNGYSYGSQAQLIYQPHQIQGLSNGSLGASGNNFDGSFSAVSSMASDNSTETKMGSNNCSNLIRQKSSPAGFFSNYSVDNGLAALREVGSFRACDVSNGQATTSTSGLHGTLNMSSRPSSCSIRMPQIVENGNEGMEANCVESRNQGNNNGSSKCYMPSFTSDFWDGSSFSAPKTESNNSEIIFSTSNALETQDADFGYHKHGLTHHLSLPSSSTKMASMDNFFHIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDVAVEYIKDLQKQVKVLTDTRAKCTCTNNQKQYSRPCA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4887g00003 442 Gene3D - 366 438 IPR036638 GO:0046983
Gabi4887g00003 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 434 - -
Gabi4887g00003 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 428 IPR036638 GO:0046983
Gabi4887g00003 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 414 IPR011598 GO:0046983
Gabi4887g00003 442 SMART finulus 370 420 IPR011598 GO:0046983
Gabi4887g00003 442 Pfam Helix-loop-helix DNA-binding domain 370 415 IPR011598 GO:0046983
Gabi4887g00003 442 FunFam Transcription factor bHLH130 family 365 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4887g00003 Gabi-Chr4887 24856 28088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4887g00003 22 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 36.298 3.26e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4887g00003 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4887g00003 - - gmx:100795896 607.446