Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4880g00010 ATGATGTCTGAAGAAGCCTTTTCTGTTCCTTCCAACACCACCAGAGAAGGCTCCTTATTGGTTCATGTTCAAGAACCAAACTCAAACCCTACTTCAAATCCAGCTAAGAAAAAAAGAAACCTACCCGGAACACCAGATCCAGAAGCAGAAGTGATAGCTCTGTCACCAAAGTCTCTGATGGCAACCAACCGTTTCATCTGCGAAATCTGCAATAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTGCACCGCCGCGGTCACAACCTCCCGTGGAAGCTACGGCAAAGAACAAACAAAGATCAGGTAAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGTTGCGTGCACCATGACCCTTGTAGAGCACTTGGAGATTTAACAGGTATAAAGAAACACTTCAGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGTAACAAATGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAAGCACATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACACATAGAGCCTTTTGTGACGCTTTGGCTGAAGAAAATGTGGGAGTAACTAGAGTTCCAGCAGCTTTATGTAACTTGAGAAGTGATCATTTGGGCAATGTTCAATTGCCAAGGTTCCCTCAGATTTTTCATGGGTTTCGTTCAGAACATGGTAGTGGTTCAGGGTCAGAACCATTAGGAAATTATGCAGACACAAACAATGACCAGAAGCTGAGGCTGCCACTATGGTTAGACCAAGTCAATTTCCCTAACAAGTCAAGTGCTTTTTCATTAGGAGCAAACTCTGCTTGCACCATGCCTGATTTATTGCAAACAATGGACATGTTAGGTTCACCCTCACAGGCACAGTGGTTGAATCACAGATACCCTGAAGTGTTATTTTCAAGTGCCAACATATCACTGCCTGCACTACCACCACATGGACTGAAGCAAGAACACGAAGAAGGCTTCAACAGCAACAATAATCTCAACAACGTCTTTGGTTGCTTCATGGGGTCAAACAATAATAATATTGTTGAGGTTCAGAAGTTTCTCAAGCAAGCAAATATTGATCACCATCAAGCTGAAAACTTGAACGAGTTAATGAATTTCGAAGCCAGCACCAACAACCTTGGAGGGTATTCATTAAACGACTCGAACAACAACTCGTGTGTGGTTGTGTCTAGCACGAAGAATGTGGATCACGTGATGATGATGCAAATGGGTGAAGAGACAACAAATCTACCACAATCAATCATGGCCAAGCAACAACTACATCAAACCTTAAAAAACAAAGACCACCTTGGTTTTACACGAGACTTCTTGGGTGTTGGAGATGAATTTAATGCAATTGAATCAACCATGAACCTTCAGAGCCAGTATGGTGGACATTATTGCTAG 1431 0.4319 MMSEEAFSVPSNTTREGSLLVHVQEPNSNPTSNPAKKKRNLPGTPDPEAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCNKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEENVGVTRVPAALCNLRSDHLGNVQLPRFPQIFHGFRSEHGSGSGSEPLGNYADTNNDQKLRLPLWLDQVNFPNKSSAFSLGANSACTMPDLLQTMDMLGSPSQAQWLNHRYPEVLFSSANISLPALPPHGLKQEHEEGFNSNNNLNNVFGCFMGSNNNNIVEVQKFLKQANIDHHQAENLNELMNFEASTNNLGGYSLNDSNNNSCVVVSSTKNVDHVMMMQMGEETTNLPQSIMAKQQLHQTLKNKDHLGFTRDFLGVGDEFNAIESTMNLQSQYGGHYC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4880g00010 476 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Gabi4880g00010 476 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Gabi4880g00010 476 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gabi4880g00010 476 Gene3D Classic Zinc Finger 120 198 - -
Gabi4880g00010 476 Gene3D Classic Zinc Finger 43 117 - -
Gabi4880g00010 476 MobiDBLite consensus disorder prediction 1 38 - -
Gabi4880g00010 476 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Gabi4880g00010 476 MobiDBLite consensus disorder prediction 1 48 - -
Gabi4880g00010 476 SMART c2h2final6 65 87 IPR013087 -
Gabi4880g00010 476 SMART c2h2final6 107 137 IPR013087 -
Gabi4880g00010 476 SMART c2h2final6 142 162 IPR013087 -
Gabi4880g00010 476 FunFam protein indeterminate-domain 12-like 44 113 - -
Gabi4880g00010 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gabi4880g00010 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 463 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4880g00010 Gabi-Chr4880 81801 83964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4880g00010 35 206 IDZ Gene Family AT3G45260 86.047 2.44e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4880g00010 zf-C2H2_jaz 6.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4880g00010 K25870 - gmx:100781896 532.332