Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4880g00001 ATGGCTTCCTCCATCAATTCGAAATCAGAAAAGAATAAAACCAAAAACCGAGAAACCTCTTCAATTGGTAGTAAAACGAAAAAGAATAGAGACTCAGAGAAGGAGAACGAAAAGAAGAAGAAGAATAAGAAACTCAAGCTCAGCAATGGAAATTCGAAACGACCAGAGCAGCAAGAAGCTGAAGAAGACAAGACCGTTGTTTCCAATGGAAGAACTAGTGGTACGAAGCCTAAGAAATCAAAAGGAAAGCAACGCGAGCACGAAGAGGAAGAGGTAGGCGAAGTCGAAGGCGGAGAAGAAGACGCGAAAACGAACGTGTTTCCGATGAATCGTATAAGGACGATGATTAAGGGCGAAGATCCTGATTTGCGTGTTTCTCAGGAAGCTATATTGGCCATCAACAAAGCTGCGGAGAAGTTCCTTGAACAATTCACTCAGGACGCTTATGCTTGTTCTGTTCAGGACCGTAAGAAATCTCTCAATTACAAGCACCTATCATATGTTGTTAGTAAGCAGAGGAGATATGACTTTCTTTCAGATTTTGTTCCTGAGAAAATGAAAGCTGAGGATGCATTAAGAGAGAGAAATTCAGGAGGGAATGGAGGAGATTAG 612 0.4167 MASSINSKSEKNKTKNRETSSIGSKTKKNRDSEKENEKKKKNKKLKLSNGNSKRPEQQEAEEDKTVVSNGRTSGTKPKKSKGKQREHEEEEVGEVEGGEEDAKTNVFPMNRIRTMIKGEDPDLRVSQEAILAINKAAEKFLEQFTQDAYACSVQDRKKSLNYKHLSYVVSKQRRYDFLSDFVPEKMKAEDALRERNSGGNGGD 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4880g00001 203 Gene3D Histone, subunit A 69 184 IPR009072 GO:0046982
Gabi4880g00001 203 MobiDBLite consensus disorder prediction 1 106 - -
Gabi4880g00001 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 107 169 IPR003958 -
Gabi4880g00001 203 SUPERFAMILY Histone-fold 73 178 IPR009072 GO:0046982
Gabi4880g00001 203 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 44 200 - -
Gabi4880g00001 203 MobiDBLite consensus disorder prediction 10 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4880g00001 59 166 CCAAT-HAP5 Transcription Factor Family AT1G07980 40.541 2.24e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gabi4880g00001 CBFD_NFYB_HMF 1.2e-12 CL0012