Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi487g00008 ATGGGGGGCAAATGTCCGCACAGACACGTGAAGAAAAGAAGATATTCTCACAAGACTGCTCGCCGTACCAAATTCCTCTACAAAGGGGATGACATGGTTTATGCGCAGCTAAATCAGCATGATGAAGAGAAGAGCACTTTACCTGTAGATGAAGATTTGCCTGGGATGGGCCAGTACTATTGCCTTCACTGCGATCGATACTTTTCCAATGTAGCTGTGAGGGATGAGCATTTTAAGACCAAACGACACAAGAAGCGTGTAAAACAAATGATGGGTCCTGCTCCACATACTCAACTTGATGCTGACTTAGCTGCAGGAATGGGTATGCCAGACAATGGACCAAAGCTAATGTCTATGTAG 360 0.4528 MGGKCPHRHVKKRRYSHKTARRTKFLYKGDDMVYAQLNQHDEEKSTLPVDEDLPGMGQYYCLHCDRYFSNVAVRDEHFKTKRHKKRVKQMMGPAPHTQLDADLAAGMGMPDNGPKLMSM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi487g00008 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Gabi487g00008 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Gabi487g00008 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Gabi487g00008 119 FunFam Zinc finger protein 593 45 109 - -
Gabi487g00008 119 SUPERFAMILY beta-beta-alpha zinc fingers 47 110 IPR036236 -
Gabi487g00008 119 Gene3D Classic Zinc Finger 44 109 - -
Gabi487g00008 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi487g00008 Gabi-Chr487 136338 138878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi487g00008 3 118 C2H2 Transcription Factor Family AT2G36930 75.000 9.30e-62 185