Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi487g00006 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGACTGGCTTCCTGCAATCGGTTACGGCGGCGGTGTGGAAAACACGACCGCCGGAGGGAAGGCTTCCGCCCCCGAGGTCGAGTGCCGGCAATGGTTCCAACGATGTTTCCAGAGGCAATGATCCTCCCATGCCGGTTCAGAGTACGCCGCCTGAAACGGTGAAAATAGCCGCAGCGGAGTCTAAACCGGCACCGGTTCAGCCCGAGAAGCCGAAACCTACTCATGTTAAAAGGGTGTCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACATTGAATATAAAGGATTTTTATAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGAACTAATAAGGAGTTTGCTTGCAAATCCATTGCAAAGAGGAAACTTACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCAAATGTGATACAAATACTTGGTGCTTACGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGACAGGATCATACAGAGGGGGCATTATACTGAAAGAAAAGCTGCTGAACTTGCAAGGTTGATTGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCCGAGAATTTTCTCTTCATCAACCATGAAGAAGAATCACCCCTTAAGACAATAGATTTTGGACTCTCGGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTGAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAAGGAATATTTGAACAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCTAGCATATCTGAAAGTGCAAAGGATCTTGTTAGAAGAATGCTTATAAGGGACCCTAAGAAGCGGATGACGGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGATTAGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTCATTGGTTAATGCAAGCGGCTGATGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATATGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATCACACGGGATGAGCTCCAACAAGCCTGTGAACAGTTTGGCCTAAATGAGGATCATCTAGATGATATAATACGTGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGATTTTGGCAAAATGGGGCTACAAATAACATGA 1686 0.4531 MGNNCVGPNLGGTGFLQSVTAAVWKTRPPEGRLPPPRSSAGNGSNDVSRGNDPPMPVQSTPPETVKIAAAESKPAPVQPEKPKPTHVKRVSSVGLQVESVLGRKTLNIKDFYSLGRKLGQGQFGTTFLCVEKGTNKEFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQILGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVQIRGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEIHWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLYAAFSYFDKDGSGYITRDELQQACEQFGLNEDHLDDIIREVDQDNDGRIDYSEFAAMMQDTDFGKMGLQIT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi487g00006 561 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Gabi487g00006 561 ProSitePatterns Protein kinases ATP-binding region signature. 118 145 IPR017441 GO:0005524
Gabi487g00006 561 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Gabi487g00006 561 Gene3D Transferase(Phosphotransferase) domain 1 198 375 - -
Gabi487g00006 561 ProSitePatterns EF-hand calcium-binding domain. 532 544 IPR018247 -
Gabi487g00006 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 544 - -
Gabi487g00006 561 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Gabi487g00006 561 FunFam Calcium-dependent protein kinase 1 114 197 - -
Gabi487g00006 561 FunFam Calcium-dependent protein kinase SK5 198 382 - -
Gabi487g00006 561 Pfam Protein kinase domain 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00006 561 MobiDBLite consensus disorder prediction 38 54 - -
Gabi487g00006 561 CDD EFh 492 549 IPR002048 GO:0005509
Gabi487g00006 561 FunFam Calcium-dependent protein kinase 1 378 552 - -
Gabi487g00006 561 ProSiteProfiles Protein kinase domain profile. 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00006 561 SUPERFAMILY EF-hand 399 550 IPR011992 -
Gabi487g00006 561 SMART serkin_6 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00006 561 CDD STKc_CAMK 111 369 - -
Gabi487g00006 561 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Gabi487g00006 561 Pfam EF-hand domain pair 418 478 IPR002048 GO:0005509
Gabi487g00006 561 Pfam EF-hand domain pair 488 549 IPR002048 GO:0005509
Gabi487g00006 561 MobiDBLite consensus disorder prediction 21 61 - -
Gabi487g00006 561 SUPERFAMILY Protein kinase-like (PK-like) 110 371 IPR011009 -
Gabi487g00006 561 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Gabi487g00006 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gabi487g00006 561 Gene3D - 377 553 - -
Gabi487g00006 561 Gene3D Phosphorylase Kinase; domain 1 114 197 - -
Gabi487g00006 561 ProSiteProfiles EF-hand calcium-binding domain profile. 521 554 IPR002048 GO:0005509
Gabi487g00006 561 MobiDBLite consensus disorder prediction 71 90 - -
Gabi487g00006 561 SMART efh_1 417 445 IPR002048 GO:0005509
Gabi487g00006 561 SMART efh_1 489 517 IPR002048 GO:0005509
Gabi487g00006 561 SMART efh_1 453 481 IPR002048 GO:0005509
Gabi487g00006 561 SMART efh_1 523 551 IPR002048 GO:0005509
Gabi487g00006 561 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi487g00006 Gabi-Chr487 81287 91242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi487g00006 1 561 EF-hand Containing Proteins AT2G38910 76.329 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi487g00006 Pkinase 2.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi487g00006 K13412 - gmx:100813232 1000.73