Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi487g00005 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGACTGGCTTCCTGCAATCGGTTACGGCGGCGGTGTGGAAAACACGACCGCCGGAGGGAAGGCTTCCGCCCCCGAGCCCAGCTGACAACAAGAACAAATCTCCGGCGCCAGCTAATGCGGCTCCCGATTCCTCCAAAGGAGGGTCGAGTGCCGGCAATGGTTCCAACGATGTTTCCAGAGGCAATGATCCTCCCATGCCGGTTCAGAGTACGCCGCCTGAAACGGTGAAAATAGCCGCACCAGTGGTGAAAAATGAACCGGCATCTGGTACTGCTGCTGGTGTTGATGCAGGGAAAGCTAAGAAACCTACTCATGTTAAAAGGGTGTCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACATTGAATATAAAGGATTTTTATAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGAACTAATAAGGAGTTTGCTTGCAAATCCATTGCAAAGAGGAAACTTACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCAAATGTGATACAAATACTTGGTGCTTACGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGACAGGATCATACAGAGGGGGCATTATACTGAAAGAAAAGCTGCTGAACTTGCAAGGTTGATTGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCCGAGAATTTTCTCTTCATCAACCATGAAGAAGAATCACCCCTTAAGACAATAGATTTTGGACTCTCGGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTGAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAAGGAATATTTGAACAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCTAGCATATCTGAAAGTGCAAAGGATCTTGTTAGAAGAATGCTTATAAGGGACCCTAAGAAGCGGATGACGGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGATTAGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTCATTGGTTAATGCAAGCGGCTGATGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATATGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATCACACGGGATGAGCTCCAACAAGCCTGTGAACAGTTTGGCCTAAATGAGGATCATCTAGATGATATAATACGTGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGATTTTGGCAAAATGGGGCTACAAATAACATGA 1776 0.455 MGNNCVGPNLGGTGFLQSVTAAVWKTRPPEGRLPPPSPADNKNKSPAPANAAPDSSKGGSSAGNGSNDVSRGNDPPMPVQSTPPETVKIAAPVVKNEPASGTAAGVDAGKAKKPTHVKRVSSVGLQVESVLGRKTLNIKDFYSLGRKLGQGQFGTTFLCVEKGTNKEFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQILGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVQIRGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEIHWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLYAAFSYFDKDGSGYITRDELQQACEQFGLNEDHLDDIIREVDQDNDGRIDYSEFAAMMQDTDFGKMGLQIT 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi487g00005 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gabi487g00005 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 135 574 - -
Gabi487g00005 591 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Gabi487g00005 591 FunFam Calcium-dependent protein kinase 1 408 582 - -
Gabi487g00005 591 CDD STKc_CAMK 141 399 - -
Gabi487g00005 591 Pfam EF-hand domain pair 448 508 IPR002048 GO:0005509
Gabi487g00005 591 Pfam EF-hand domain pair 518 579 IPR002048 GO:0005509
Gabi487g00005 591 Gene3D Phosphorylase Kinase; domain 1 144 227 - -
Gabi487g00005 591 SUPERFAMILY EF-hand 429 580 IPR011992 -
Gabi487g00005 591 MobiDBLite consensus disorder prediction 48 76 - -
Gabi487g00005 591 ProSitePatterns EF-hand calcium-binding domain. 562 574 IPR018247 -
Gabi487g00005 591 ProSiteProfiles EF-hand calcium-binding domain profile. 515 550 IPR002048 GO:0005509
Gabi487g00005 591 FunFam Calcium-dependent protein kinase SK5 228 412 - -
Gabi487g00005 591 Gene3D - 407 583 - -
Gabi487g00005 591 SMART serkin_6 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00005 591 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Gabi487g00005 591 SMART efh_1 553 581 IPR002048 GO:0005509
Gabi487g00005 591 SMART efh_1 519 547 IPR002048 GO:0005509
Gabi487g00005 591 SMART efh_1 447 475 IPR002048 GO:0005509
Gabi487g00005 591 SMART efh_1 483 511 IPR002048 GO:0005509
Gabi487g00005 591 Pfam Protein kinase domain 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00005 591 ProSiteProfiles EF-hand calcium-binding domain profile. 551 584 IPR002048 GO:0005509
Gabi487g00005 591 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Gabi487g00005 591 FunFam Calcium-dependent protein kinase 1 144 227 - -
Gabi487g00005 591 Gene3D Transferase(Phosphotransferase) domain 1 228 405 - -
Gabi487g00005 591 MobiDBLite consensus disorder prediction 21 84 - -
Gabi487g00005 591 ProSitePatterns Protein kinases ATP-binding region signature. 148 175 IPR017441 GO:0005524
Gabi487g00005 591 ProSitePatterns EF-hand calcium-binding domain. 528 540 IPR018247 -
Gabi487g00005 591 ProSiteProfiles Protein kinase domain profile. 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00005 591 SUPERFAMILY Protein kinase-like (PK-like) 140 401 IPR011009 -
Gabi487g00005 591 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Gabi487g00005 591 CDD EFh 522 579 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi487g00005 Gabi-Chr487 81287 91242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi487g00005 1 591 EF-hand Containing Proteins AT2G38910 74.747 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi487g00005 Pkinase 2.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi487g00005 K13412 - gmx:100813232 992.26