Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi487g00004 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGACTGGCTTCCTGCAATCGGTTACGGCGGCGGTGTGGAAAACACGACCGCCGGAGGGAAGGCTTCCGCCCCCGAGCCCAGCTGACAACAAGAACAAATCTCCGGCGCCAGCTAATGCGGCTCCCGATTCCTCCAAAGGAGGGTCGAGTGCCGGCAATGGTTCCAACGATGTTTCCAGAGGCAATGATCCTCCCATGCCGGTTCAGAGTACGCCGCCTGAAACGGTGAAAATAGCCGCAGCGGAGTCTAAACCGGCACCGGTTCAGCCCGAGAAGCCGGTTCAGCCAGAGAAGCCGGTTCAGCCAAAACCTACTCATGTTAAAAGGGTGTCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACATTGAATATAAAGGATTTTTATAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGAACTAATAAGGAGTTTGCTTGCAAATCCATTGCAAAGAGGAAACTTACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCAAATGTGATACAAATACTTGGTGCTTACGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGACAGGATCATACAGAGGGGGCATTATACTGAAAGAAAAGCTGCTGAACTTGCAAGGTTGATTGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCCGAGAATTTTCTCTTCATCAACCATGAAGAAGAATCACCCCTTAAGACAATAGATTTTGGACTCTCGGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTGAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAAGGAATATTTGAACAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCTAGCATATCTGAAAGTGCAAAGGATCTTGTTAGAAGAATGCTTATAAGGGACCCTAAGAAGCGGATGACGGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGATTAGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTCATTGGTTAATGCAAGCGGCTGATGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATATGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATCACACGGGATGAGCTCCAACAAGCCTGTGAACAGTTTGGCCTAAATGAGGATCATCTAGATGATATAATACGTGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGATTTTGGCAAAATGGGGCTACAAATAACATGA 1779 0.4598 MGNNCVGPNLGGTGFLQSVTAAVWKTRPPEGRLPPPSPADNKNKSPAPANAAPDSSKGGSSAGNGSNDVSRGNDPPMPVQSTPPETVKIAAAESKPAPVQPEKPVQPEKPVQPKPTHVKRVSSVGLQVESVLGRKTLNIKDFYSLGRKLGQGQFGTTFLCVEKGTNKEFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQILGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVQIRGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEIHWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLYAAFSYFDKDGSGYITRDELQQACEQFGLNEDHLDDIIREVDQDNDGRIDYSEFAAMMQDTDFGKMGLQIT 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi487g00004 592 Gene3D Phosphorylase Kinase; domain 1 145 228 - -
Gabi487g00004 592 ProSitePatterns Protein kinases ATP-binding region signature. 149 176 IPR017441 GO:0005524
Gabi487g00004 592 Pfam EF-hand domain pair 449 509 IPR002048 GO:0005509
Gabi487g00004 592 Pfam EF-hand domain pair 519 580 IPR002048 GO:0005509
Gabi487g00004 592 ProSiteProfiles EF-hand calcium-binding domain profile. 516 551 IPR002048 GO:0005509
Gabi487g00004 592 ProSitePatterns EF-hand calcium-binding domain. 563 575 IPR018247 -
Gabi487g00004 592 FunFam Calcium-dependent protein kinase 1 409 583 - -
Gabi487g00004 592 CDD EFh 523 580 IPR002048 GO:0005509
Gabi487g00004 592 MobiDBLite consensus disorder prediction 48 76 - -
Gabi487g00004 592 MobiDBLite consensus disorder prediction 21 118 - -
Gabi487g00004 592 ProSiteProfiles Protein kinase domain profile. 143 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00004 592 ProSitePatterns EF-hand calcium-binding domain. 529 541 IPR018247 -
Gabi487g00004 592 CDD STKc_CAMK 142 400 - -
Gabi487g00004 592 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Gabi487g00004 592 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Gabi487g00004 592 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Gabi487g00004 592 SMART serkin_6 143 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00004 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Gabi487g00004 592 SUPERFAMILY EF-hand 430 581 IPR011992 -
Gabi487g00004 592 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 575 - -
Gabi487g00004 592 FunFam Calcium-dependent protein kinase SK5 229 413 - -
Gabi487g00004 592 Pfam Protein kinase domain 143 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00004 592 Gene3D Transferase(Phosphotransferase) domain 1 229 406 - -
Gabi487g00004 592 FunFam Calcium-dependent protein kinase 1 145 228 - -
Gabi487g00004 592 SUPERFAMILY Protein kinase-like (PK-like) 141 402 IPR011009 -
Gabi487g00004 592 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Gabi487g00004 592 Gene3D - 408 584 - -
Gabi487g00004 592 SMART efh_1 520 548 IPR002048 GO:0005509
Gabi487g00004 592 SMART efh_1 448 476 IPR002048 GO:0005509
Gabi487g00004 592 SMART efh_1 484 512 IPR002048 GO:0005509
Gabi487g00004 592 SMART efh_1 554 582 IPR002048 GO:0005509
Gabi487g00004 592 ProSiteProfiles EF-hand calcium-binding domain profile. 552 585 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi487g00004 Gabi-Chr487 81287 91242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi487g00004 1 592 EF-hand Containing Proteins AT2G38910 75.462 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi487g00004 Pkinase 2.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi487g00004 K13412 - gmx:100813232 986.867