Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi487g00003 ATGGGCAACAACTGTGTGGGACCAAACCTCGGTGGGACTGGCTTCCTGCAATCGGTTACGGCGGCGGTGTGGAAAACACGACCGCCGGAGGGAAGGCTTCCGCCCCCGAGCCCAGCTGACAACAAGAACAAATCTCCGGCGCCAGCTAATGCGGCTCCCGATTCCTCCAAAGGAGGGTCGAGTGCCGGCAATGGTTCCAACGATGTTTCCAGAGGCAATGATCCTCCCATGCCGGTTCAGAGTACGCCGCCTGAAACGGTGAAAATAGCCGCAGCGGAGTCTAAACCGGCACCGGTTCAGCCCGAGAAGCCGGTTCAGCCAGAGAAGCCGGTTCAGCCAGTGGTGAAAAATGAACCGGCATCTGGTACTGCTGCTGGTGTTGATGCAGGGAAAGCTAAGAAACCTACTCATGTTAAAAGGGTGTCTAGTGTTGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACATTGAATATAAAGGATTTTTATAGTTTGGGGAGGAAGCTTGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAGGGAACTAATAAGGAGTTTGCTTGCAAATCCATTGCAAAGAGGAAACTTACCACACAGGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCAAATGTGATACAAATACTTGGTGCTTACGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGACAGGATCATACAGAGGGGGCATTATACTGAAAGAAAAGCTGCTGAACTTGCAAGGTTGATTGTCAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCCGAGAATTTTCTCTTCATCAACCATGAAGAAGAATCACCCCTTAAGACAATAGATTTTGGACTCTCGGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATTTATATTTTACTGAGTGGAGTTCCCCCATTTTGGGACGAAACGGAACAAGGAATATTTGAACAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCTAGCATATCTGAAAGTGCAAAGGATCTTGTTAGAAGAATGCTTATAAGGGACCCTAAGAAGCGGATGACGGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGATTAGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTCATTGGTTAATGCAAGCGGCTGATGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATATGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATCACACGGGATGAGCTCCAACAAGCCTGTGAACAGTTTGGCCTAAATGAGGATCATCTAGATGATATAATACGTGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGATTTTGGCAAAATGGGGCTACAAATAACATGA 1839 0.4611 MGNNCVGPNLGGTGFLQSVTAAVWKTRPPEGRLPPPSPADNKNKSPAPANAAPDSSKGGSSAGNGSNDVSRGNDPPMPVQSTPPETVKIAAAESKPAPVQPEKPVQPEKPVQPVVKNEPASGTAAGVDAGKAKKPTHVKRVSSVGLQVESVLGRKTLNIKDFYSLGRKLGQGQFGTTFLCVEKGTNKEFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQILGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLCHPWVQIRGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEIHWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLYAAFSYFDKDGSGYITRDELQQACEQFGLNEDHLDDIIREVDQDNDGRIDYSEFAAMMQDTDFGKMGLQIT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi487g00003 612 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Gabi487g00003 612 Pfam Protein kinase domain 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00003 612 SUPERFAMILY EF-hand 450 601 IPR011992 -
Gabi487g00003 612 ProSiteProfiles EF-hand calcium-binding domain profile. 500 535 IPR002048 GO:0005509
Gabi487g00003 612 ProSitePatterns EF-hand calcium-binding domain. 583 595 IPR018247 -
Gabi487g00003 612 Gene3D Transferase(Phosphotransferase) domain 1 249 426 - -
Gabi487g00003 612 Gene3D - 428 604 - -
Gabi487g00003 612 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Gabi487g00003 612 FunFam Calcium-dependent protein kinase 1 429 603 - -
Gabi487g00003 612 MobiDBLite consensus disorder prediction 48 76 - -
Gabi487g00003 612 Pfam EF-hand domain pair 469 529 IPR002048 GO:0005509
Gabi487g00003 612 Pfam EF-hand domain pair 539 600 IPR002048 GO:0005509
Gabi487g00003 612 SMART serkin_6 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00003 612 PANTHER SERINE/THREONINE-PROTEIN KINASE 156 595 - -
Gabi487g00003 612 ProSitePatterns Protein kinases ATP-binding region signature. 169 196 IPR017441 GO:0005524
Gabi487g00003 612 SMART efh_1 574 602 IPR002048 GO:0005509
Gabi487g00003 612 SMART efh_1 468 496 IPR002048 GO:0005509
Gabi487g00003 612 SMART efh_1 504 532 IPR002048 GO:0005509
Gabi487g00003 612 SMART efh_1 540 568 IPR002048 GO:0005509
Gabi487g00003 612 MobiDBLite consensus disorder prediction 21 136 - -
Gabi487g00003 612 CDD EFh 543 600 IPR002048 GO:0005509
Gabi487g00003 612 ProSiteProfiles EF-hand calcium-binding domain profile. 536 571 IPR002048 GO:0005509
Gabi487g00003 612 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Gabi487g00003 612 ProSiteProfiles Protein kinase domain profile. 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi487g00003 612 Gene3D Phosphorylase Kinase; domain 1 165 248 - -
Gabi487g00003 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Gabi487g00003 612 CDD STKc_CAMK 162 420 - -
Gabi487g00003 612 FunFam Calcium-dependent protein kinase SK5 249 433 - -
Gabi487g00003 612 SUPERFAMILY Protein kinase-like (PK-like) 161 422 IPR011009 -
Gabi487g00003 612 ProSitePatterns EF-hand calcium-binding domain. 549 561 IPR018247 -
Gabi487g00003 612 ProSiteProfiles EF-hand calcium-binding domain profile. 572 605 IPR002048 GO:0005509
Gabi487g00003 612 FunFam Calcium-dependent protein kinase 1 165 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi487g00003 Gabi-Chr487 81266 91242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi487g00003 1 612 EF-hand Containing Proteins AT2G38910 73.008 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi487g00003 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi487g00003 K13412 - gmx:100813232 993.03