Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4878g00007 ATGACCCTCTCTACTGTCTTCAAGCCAATTGGTCATGGAATATTGAAGCATCTCAGAGCCTTCACTTTCAGAGGCAACTTATTTTGCATGATTGCACTGCACTCATTTGTCAAGATAGCGGATCCTTCTGCTGTGAGCTTTTGCTTCTTGAGGGATGTTAGGAAGGCACTCACTAGACTAGGAGCTCTTCATTTTCTTGTGGAGGCTGCTGGTTGTGGCAGCATGGTTTCTAGGGAAAGAGCTTGTCAATCTATTGGGTTGCTTGGAGTCACAAGACAGGCTAGGCGTACCCTTGTTGATTTGGGAGTGATACCGGTGCTTGTGGAGTTGTTTCGCGATGGAGATCAAGCCACGAAAATTGTAGCTGGTAACTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGACCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTCCTTCAAGGACCTGATCATGCTGGTAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCGGAGGCTAATGCTGTTGAAATTGCCGGGCACCTGGTGAGAGTTCTTAGACAAGGTGATGATGATGCAAAGGCAGCCGCGGCTGATGTGATATGGGATCTGTCAGGTTATAAGCACTCAACATCTGTGGTCCGTGATTCGGGTGCAATCCCTATCCTTGTTGAGCTTTTGGGGAGTGGAAGTGAAGAGGTAAAGGAGAATGTTTCTGGGGCATTTGCTCAGCTAAGCTATGATGGAGGTGATAGAATAGCACTTGCCAATGCAGGGGCAATTCCAATTCTCATTGACTTGCTGCATGATGAGATTGAGGAACTAAGGGATAATGCTGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTATACCATGATAGAGTATCTGATGCAATTAATGTTCCTTCATTCAGAAATATGCAGAATAGACTAATTCATATTCGCGCATCAAACGAGCATATGGCTAGATCCTTACGAAGAATGAGTGTTGAGCAGCTCACTTGGAACCCAGATCTTGTATAA 1032 0.4506 MTLSTVFKPIGHGILKHLRAFTFRGNLFCMIALHSFVKIADPSAVSFCFLRDVRKALTRLGALHFLVEAAGCGSMVSRERACQSIGLLGVTRQARRTLVDLGVIPVLVELFRDGDQATKIVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLQGPDHAGKEIAEDVFCILAVAEANAVEIAGHLVRVLRQGDDDAKAAAADVIWDLSGYKHSTSVVRDSGAIPILVELLGSGSEEVKENVSGAFAQLSYDGGDRIALANAGAIPILIDLLHDEIEELRDNAAEALVNFYEDPLYHDRVSDAINVPSFRNMQNRLIHIRASNEHMARSLRRMSVEQLTWNPDLV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4878g00007 343 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 288 IPR000225 GO:0005515
Gabi4878g00007 343 Gene3D - 32 168 IPR011989 -
Gabi4878g00007 343 Gene3D - 169 303 IPR011989 -
Gabi4878g00007 343 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 51 193 - -
Gabi4878g00007 343 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 262 IPR000225 GO:0005515
Gabi4878g00007 343 Coils Coil 267 287 - -
Gabi4878g00007 343 Pfam Armadillo/beta-catenin-like repeat 213 248 IPR000225 GO:0005515
Gabi4878g00007 343 Pfam Armadillo/beta-catenin-like repeat 254 287 IPR000225 GO:0005515
Gabi4878g00007 343 SMART arm_5 250 290 IPR000225 GO:0005515
Gabi4878g00007 343 SMART arm_5 209 249 IPR000225 GO:0005515
Gabi4878g00007 343 SMART arm_5 91 131 IPR000225 GO:0005515
Gabi4878g00007 343 SMART arm_5 165 208 IPR000225 GO:0005515
Gabi4878g00007 343 SUPERFAMILY ARM repeat 50 294 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4878g00007 Gabi-Chr4878 95559 97676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4878g00007 91 305 U-box Gene Family AT2G23140 27.928 4.11e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4878g00007 - - gmx:100819735 489.574