Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4878g00006 ATGGAAAAAAAATCAATGTTTGAATGGGAGGAGTTGAAAAAATTGAAGAAGGGCTCCAATGCAGATATCTACCTTGCTGTTATCACTGCTCCACAAGAATGGAAAGAGAATGTCGTTATTATGAAGAGTTCAAGGCCTTACTCAATGGAATCACTGCAAAAGGAAGAAAAGATAATGAGATCATTCATTGGTTGTGAAGAAATCCATCAATGCTCTTTCAGCCAATTCACTGAGGAGAAAGGTAAACTCATCTACAATCTCTCAATGGAATGTGCACTTTTTGGTTCTATGGGAGATTTAATTAGGAAGAGGGCACTCTTGGAGAGTGAAGTAAGAGTGTACACGCGAATGCTTCTCAAAGGACTTTCTCTCATTCATAAAAGTGGAATTGTTCATTGTGATCTCAATCCAGATAACATTCTTCTCTTTCCTTCATGCAACGATGAAGCAAGCTATAAAGTAAAGATTGCAAATTTTGGATTGTCCAAGACAAAAGAAGAGACAATCAAAGATAAGATCAAGTTTAGAGGGACACCGTTTTACATGTCACCAGAATCAGTTATGGGTGAGATTGAAACACCATTGGATATATGGTCTCTTGGATGCACAGTCATTGAGATGGTTACTGGGTTACCTATATGGAGTAATCTTGGAAGTAAGGCAGACTTAATGTTTAAGCTTGCTTTTCTTAAAGAAGCACCAGAGATACCTGATGGAATAAGCCACGAGTGCAAAGATTTCTTGAGCAAATGTTTCATCAAGGATCCTAGCAAAAGATGGAGCGCCAACATGCTTCTCAACCATCCTTTTCTGTTTGCTCCATATGATATGTTTAGAGGTTATGAAAGCTTTTCTATGGTTGTAAAAAAAAAATTGTAA 879 0.3743 MEKKSMFEWEELKKLKKGSNADIYLAVITAPQEWKENVVIMKSSRPYSMESLQKEEKIMRSFIGCEEIHQCSFSQFTEEKGKLIYNLSMECALFGSMGDLIRKRALLESEVRVYTRMLLKGLSLIHKSGIVHCDLNPDNILLFPSCNDEASYKVKIANFGLSKTKEETIKDKIKFRGTPFYMSPESVMGEIETPLDIWSLGCTVIEMVTGLPIWSNLGSKADLMFKLAFLKEAPEIPDGISHECKDFLSKCFIKDPSKRWSANMLLNHPFLFAPYDMFRGYESFSMVVKKKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4878g00006 292 Pfam Protein kinase domain 10 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4878g00006 292 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
Gabi4878g00006 292 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Gabi4878g00006 292 ProSiteProfiles Protein kinase domain profile. 9 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4878g00006 292 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 9 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4878g00006 Gabi-Chr4878 82128 83006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4878g00006 8 271 MAP Kinase Kinase Kinase AT4G36950 38.603 3.05e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi4878g00006 Pkinase 6.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4878g00006 - - gmx:102667952 345.125