Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4878g00002 ATGTCGTTAGTCTTCTCACTCCATTCTCTTACACACTCTGCCACTAGTTTTCTGGTTCTTTTCCTGAGAGTGAATCCGATTTTCTTGCATGGCTTATCCGGTTTCCTCCATCTACTGTTGTTATTGGCGCTTTTAGTGTCATGGGTGTGGAAGAAGCTCAAATTTGAAGTCAGAGACAGTTCCAAAGAGAAAATCAAGAACACCCTGTTTGCAAAGACTCTGTTTTGTTCTCTGGGTGTTTCAGCATTCAATCTTCTACTCTTTTTGTTTGATTTCTTCTGTTGGTATAGAAATATTTGGTCAGAAGAAAAGCTTGTGACCCTTTTGGATTTGGCGCTCAAAGCGGTTGCTTGGGGTGTTGTTTGTGTTTGCTTGCACTTGGAACTCTTCTGTTCAAAGGAAAGAAGGTTTCCATTCTTCTTCAGAGCTTGGTGCGCCTTCTACCTCTTTGCTTCCAGTTATTGCTTTATAGTGGACTTTGTTCTCTATAAAAAGCACGCAACTCTGCCAATTCAGTACTTAGTTTCTGATGTTTTCTCTGCTTGTGTGGGTTTATTCTTCTGTTACTTGAGTTTTTTTGTGAAAAATGAGGGTGGTGGAGTAGGAGATAGAACTCTTCAAGAACCTCTTTTGAATGGTAATTCAAAAGTTAGTAATATGTCAGAGGAAAAAAAGACCAAGGGTTTTGACACTGTTACCCCTTACTCTAATGCTGGAATTTTCAGCATTCTTACTTTCTCTTGGATTGGTCCTCTGATTGCTGTTGGCAAGAAGAAGACTTTAGACCTCGATGATGTTCCCCAACTTGATAGAAGGGATAGTTTAGATGGTGCTTTTCCAACATTCAGGGATAAACTTGAGGCATATTGTGGAGCAATTAACACAGTGACCACACTTAAGCTAGTGAAATCATTAGTATTCTCAGCATGGAAAGAGATTCTTTTGACAGCTATCCTTGCATTGGTAAACATATTTGCTTCTTATGTTGGTCCGTATCTTATTTATGGTTTTGTTCAATACCTTAATGGGGAAAGGAAATTTGAAAATGAGGGCCTTGTTTTGGTGTCTTCATTTTTTGTGGCAAAGCTTGTGGAGTGCCTGACGCGAAGGCACTGGTACTTTAGGTTGCAGCAAGTTGGAATTCGAATGCAAGCATTGCTTGTAACAATCATCTATAATAAGGCCTTGACCCTTTCATGTCAATCCAAGCAGGGCCACACTACTGGGGAGATAATCAATTTTATGACTGTTGATGCTGAAAGAGTTTGTGACTTCAGTTGGCACATGCATGATCTTTGGATGGTAGTTCTGCAGGTTTTAGTAGCCTTGTTGATTTTGTATAAAAATCTTGGGCTGGCTTCAACTTCTGCGTTTGTTGCAACTGTAATTATAATGTTGGCGAATGTTCCCTTGGGGTCAATCCAAGAGAAGTTTCAAAACAAGTTGATGGAGTCCAAAGATACGAGAATGAAGGCGACATCTGAGATTTTAAGGAACATGAGGATTCTTAAACTGCAAGGATGGGAAATGAAGTTTCTGTCTAAGATAACTGAACACAGGAAGACTGAGCAAGGGTGGTTAAGAAAATATGTACACACATTAGCCATAATCATATTTGTATTTTGGAGTGCCCCAGCATTTGTGTCTGTGGTTGCTTTTGGTACATGTATGCTTATAGGGATCCCTCTTGAATCAGGGAAGATCTTATCTGCACTTGCTACGTTCCAGATTCTTCAAGAACCCATTTATAATCTTCCAGAAACAATTTCGATGATGGCACAAACAAAGGTTTCTCTTGATAGGATTGCATCTTTCCTTCATCTTGATGACATGCAGTCCGATGTTGTTGAGAAGCTTCCACAGGGTAGTTCTGATATAGCAATTGAAGTAGTTGATGGAAATTTTTCTTGGGATTTAGATTCTCCTAGTATAACTTTGAAAAACATAAATGTCAGAGTTTTTAATGGCATGAGGGTTGCTGTTTGTGGTACCGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTATATTGGGAGAAGTACCAAAGATATCTGGGATCCTGAAGGTGTGTGGAACAAAGGCCTATGTAGCTCAGTCACCATGGATACAAAGCAGCAAGATAGAGGATAATATATTGTTTGGCAAGGATATGGAAAGGGAAAGGTATGAGAAGGTCCTTGAAGCATGTTCCCTAAAGAAGGATCTAGCTATTTTGACATTTGGAGACCAGACAATTATAGGAGAGAGGGGAATAACTTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATACCAAGATGCTGATATATATCTATTTGATGATCCGTTTAGCGCTGTGGATGCTCATACTGGATCTCATCTCTTTAAGGAATGCTTGTTGGGCCTTTTAAGTTCAAAGACTGTAGTTTATGTAACTCATCAAGTAGAGTTCTTATCCGCTGCTGACCTTATCTTGGTCATGAAAGATGGGAACATTACTCAATGTGGGAAGTATAATGATCTGCTTAATTCAGGAACTGATTTTATGGATCTTGTTGGTGCTCATAGAGAAGCTTTGTCTGCCCTTGATTCATTAGATGGAGGGCCAGTATCTGATAAACTAAGTACATCACAACAGAATGTACATGCCTTTATTTCTCATGGTGTTAAAGAACAAGAAGTAAAGGAAGATGTGCAAAATGGTGGAGCAGATAACAAATGTGAGCCAAAAGGCCAGCTTGTCCAAGAAGAAGAAAGAGAGAAAGGCAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACTACAGCATATGGAGGAGCTCTTGTACCATTCATATTGCTGGCTGAAATTCTGTTTCAGATTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAACAGATGTTGAGCCACCTGTAGGAGGAAGTATGCTTATAGTTGTCTATATAGCTTTGTCCATAGGAAGTTCTCTGTGTGTACTTGTCAGAGCAACACTTGTTGTCACTGCTGGTTATAAGACAGCTACTCTACTTTTCAATAAAATGCATTTATGCATTTTCCGTGCTCCAATGTCATTTTTTGATGCAACTCCAAGTGGGAGAATCCTTAATAGGGCTTCAACTGACCAAAGTGCAGTGGATATAGACATTCCTTTTCAAGCTGGATCATTTTCTTCCTCCATGATCCATCTCCTTGGAATTATAGTGGTCATGTCTCAAGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGACAGCAATCTGCATCTGGTATCAGCAATATTATATACCATCAGCCCGGGAATTATCGCGTTTAGTTGGGGTATGCAAGGCTCCCGTCATTCAACACTTTGCTGAAGCAATTTCTGGCACATCAACCATCAGGAGCTTTGATCAGGTTTCCAGATTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCTCAAGTTTAATATTGCTGGAGCTATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTTCTGTCACATTTGCCTTTTGCTTGATATTCTTGATATCTATTCCACATGGAGTCATAGATTCAGGTGTTGCTGGTTTAGCTGTAACATATGGCCTTAACCTGAACATCGTTCAAGGATGGATGATATGGGAACTTTGCAACATGGAGACCAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTCAATTCCTAGCGAACCTCCTCTTATTGTAGAGGAAAACCAGCCACATACTTCATGGCCATCATGTGGAAAGGTTGATATTCACAATTTGCAGGTGCGTTACGCTCCACATTTGCCACTTGTTTTGCGTGGCCTTACATGCACGTTTCTTGGAGGACTGAAAACTGGAATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTTTTCCGAATCATTGAGCCTACTGTTGGGAGAATTTTGATTGATGGCATCGACATCTGTTCCATTGGACTTCATGATTTGAGGTCTAGACTGAGCATTATCCCTCAGGATCCAACCATGTTCGAAGGTACTGTGAGAAGTAATCTAGACCCCCTTGAAGAGTACACGGATGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAGGAAAGAAGAAAAGCTAGATTCTGCAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTTTGTCTTGGTAGGGTGCTGCTTAAGAAGAGTAAGATCTTGATGCTAGATGAAGCAACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGAAACATTTCTCTGATTGCACAGTCATTACCATTGCACATAGAATAACTTCTGTTATTGATAGTGATATGGTTCTACTACTTAATCAAGGACTTATTGAGGAGTATGATTCCCCAGCTAGATTGCTAGAGGACAAGTTTTCATCTTTTGCTCAACTTGTTGCAGAGTATACCTCGAGGTCCAATTCCAATTTTGACCTACTAAAATAA 4521 0.399 MSLVFSLHSLTHSATSFLVLFLRVNPIFLHGLSGFLHLLLLLALLVSWVWKKLKFEVRDSSKEKIKNTLFAKTLFCSLGVSAFNLLLFLFDFFCWYRNIWSEEKLVTLLDLALKAVAWGVVCVCLHLELFCSKERRFPFFFRAWCAFYLFASSYCFIVDFVLYKKHATLPIQYLVSDVFSACVGLFFCYLSFFVKNEGGGVGDRTLQEPLLNGNSKVSNMSEEKKTKGFDTVTPYSNAGIFSILTFSWIGPLIAVGKKKTLDLDDVPQLDRRDSLDGAFPTFRDKLEAYCGAINTVTTLKLVKSLVFSAWKEILLTAILALVNIFASYVGPYLIYGFVQYLNGERKFENEGLVLVSSFFVAKLVECLTRRHWYFRLQQVGIRMQALLVTIIYNKALTLSCQSKQGHTTGEIINFMTVDAERVCDFSWHMHDLWMVVLQVLVALLILYKNLGLASTSAFVATVIIMLANVPLGSIQEKFQNKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKITEHRKTEQGWLRKYVHTLAIIIFVFWSAPAFVSVVAFGTCMLIGIPLESGKILSALATFQILQEPIYNLPETISMMAQTKVSLDRIASFLHLDDMQSDVVEKLPQGSSDIAIEVVDGNFSWDLDSPSITLKNINVRVFNGMRVAVCGTVGSGKSTLLSCILGEVPKISGILKVCGTKAYVAQSPWIQSSKIEDNILFGKDMERERYEKVLEACSLKKDLAILTFGDQTIIGERGITLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLSAADLILVMKDGNITQCGKYNDLLNSGTDFMDLVGAHREALSALDSLDGGPVSDKLSTSQQNVHAFISHGVKEQEVKEDVQNGGADNKCEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAEILFQILQIGSNYWMAWATPISTDVEPPVGGSMLIVVYIALSIGSSLCVLVRATLVVTAGYKTATLLFNKMHLCIFRAPMSFFDATPSGRILNRASTDQSAVDIDIPFQAGSFSSSMIHLLGIIVVMSQVAWQVFIVFIPVTAICIWYQQYYIPSARELSRLVGVCKAPVIQHFAEAISGTSTIRSFDQVSRFQQTNMKLMDGYSRLKFNIAGAMEWLCFRLDMLSSVTFAFCLIFLISIPHGVIDSGVAGLAVTYGLNLNIVQGWMIWELCNMETKIISVERILQYTSIPSEPPLIVEENQPHTSWPSCGKVDIHNLQVRYAPHLPLVLRGLTCTFLGGLKTGIVGRTGSGKSTLIQTLFRIIEPTVGRILIDGIDICSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKEEKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKILMLDEATASVDTATDNLIQQTLRKHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPARLLEDKFSSFAQLVAEYTSRSNSNFDLLK 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4878g00002 1506 Gene3D - 603 860 IPR027417 -
Gabi4878g00002 1506 FunFam ABC transporter C family member 3 1241 1493 - -
Gabi4878g00002 1506 SUPERFAMILY ABC transporter transmembrane region 302 602 IPR036640 GO:0005524|GO:0016020
Gabi4878g00002 1506 FunFam ABC transporter C family member 5 613 860 - -
Gabi4878g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 301 602 IPR036640 GO:0005524|GO:0016020
Gabi4878g00002 1506 Pfam ABC transporter 646 780 IPR003439 GO:0005524
Gabi4878g00002 1506 SMART AAA_5 655 828 IPR003593 GO:0016887
Gabi4878g00002 1506 SMART AAA_5 1284 1469 IPR003593 GO:0016887
Gabi4878g00002 1506 CDD ABC_6TM_ABCC_D2 939 1233 IPR044726 GO:0140359
Gabi4878g00002 1506 FunFam ABC transporter C family member 5 902 1239 - -
Gabi4878g00002 1506 CDD ABC_6TM_ABCC_D1 315 602 IPR044746 GO:0140359
Gabi4878g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 851 IPR003439 GO:0005524
Gabi4878g00002 1506 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 235 1494 - -
Gabi4878g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 941 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4878g00002 1506 CDD ABCC_MRP_domain1 628 827 - -
Gabi4878g00002 1506 Pfam ABC transporter transmembrane region 941 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4878g00002 1506 Pfam ABC transporter transmembrane region 314 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4878g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 850 IPR027417 -
Gabi4878g00002 1506 Gene3D - 1241 1494 IPR027417 -
Gabi4878g00002 1506 FunFam ABC transporter C family member 10 297 610 - -
Gabi4878g00002 1506 Pfam ABC transporter 1277 1423 IPR003439 GO:0005524
Gabi4878g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1247 1483 IPR027417 -
Gabi4878g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 901 1239 IPR036640 GO:0005524|GO:0016020
Gabi4878g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 314 594 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4878g00002 1506 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
Gabi4878g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1492 IPR003439 GO:0005524
Gabi4878g00002 1506 SUPERFAMILY ABC transporter transmembrane region 939 1239 IPR036640 GO:0005524|GO:0016020
Gabi4878g00002 1506 CDD ABCC_MRP_domain2 1256 1476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4878g00002 Gabi-Chr4878 12374 22960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4878g00002 628 874 Calmodulin-binding Proteins AT2G36910 29.213 3.38e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4878g00002 - K05666 gmx:100775358 2421.35