Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4875g00001 ATGAGTTTTCAAGATATCCAAGGTGGGGCCAGCACTCCCGCTCGCCGGAACCAGTCTCCGTCGCATGCCGTCGCTGCCGGAATCTTCCAGATCAACACCGCCGTCGCTACTTTCCGGCGACTCGTCGATGCCGTTGGAACCGTTAAAGACACGCCTGAGCACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAGTTGGTGAAGGATACATCTTCTAAGCTCAAATCCTTGACCGAATCTGATCATGATGCCAATGTCAATGCTAGTAAGAAAATTGAAGATGCTAAGCTAGCAAAAGATTTCCAGACCACATTGCAAGAATTCCAGAAAGTGCAACAGCTTGCTTCGGAGCGCGAATCAACTTACACACCTGCTGCCCCTTCTTCTTTACCAACAAGCTCTGACTATGGTGAAGAATCGGTTAAAATAGACCTGGAAAGCCAACCTTTAATCAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAACGAAATATCCTTCAATGAGGCCATGATTGAAGAAAGAGAACAAGGTATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAACGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGATCAGGGGGTTGTTATTGATGACATTCACTCAAATATCGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTTCAGCTAGCCAAGGCTTCCAAAGGTGTGAAATCCAGAATCTCATGGTGTTGGTGGGTGCTTGTAATTTTGGTGGTGGTGGTGGTCATCTTACTTATTGTACTTATTATTTAG 798 0.4574 MSFQDIQGGASTPARRNQSPSHAVAAGIFQINTAVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQLVKDTSSKLKSLTESDHDANVNASKKIEDAKLAKDFQTTLQEFQKVQQLASERESTYTPAAPSSLPTSSDYGEESVKIDLESQPLIREQKRQEILLLDNEISFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIHSNIDASAGATTQARVQLAKASKGVKSRISWCWWVLVILVVVVVILLIVLII 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4875g00001 265 CDD SNARE_Qa 175 233 - -
Gabi4875g00001 265 Gene3D - 166 265 - -
Gabi4875g00001 265 FunFam Syntaxin-22 like 15 128 - -
Gabi4875g00001 265 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Gabi4875g00001 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Gabi4875g00001 265 SMART SynN_4 8 122 IPR006011 GO:0016020
Gabi4875g00001 265 Coils Coil 175 195 - -
Gabi4875g00001 265 SMART tSNARE_6 167 234 IPR000727 -
Gabi4875g00001 265 PANTHER SYNTAXIN 19 254 IPR045242 -
Gabi4875g00001 265 FunFam Syntaxin-22 like 165 265 - -
Gabi4875g00001 265 MobiDBLite consensus disorder prediction 118 138 - -
Gabi4875g00001 265 MobiDBLite consensus disorder prediction 118 141 - -
Gabi4875g00001 265 SUPERFAMILY t-snare proteins 21 227 IPR010989 GO:0016020|GO:0016192
Gabi4875g00001 265 Gene3D - 10 130 - -
Gabi4875g00001 265 Pfam SNARE domain 209 260 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4875g00001 Gabi-Chr4875 7983 10742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4875g00001 1 252 SNARE and Associated Proteins AT5G46860 58.755 1.57e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4875g00001 - - gmx:100787141 423.705