Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4874g00002 ATGGTTTCAAGATATGATTTTATAAAGGATCTTAATCCTACAAAGGAGGACTGGAGGATTAAGGTTAAGGTTGTTCGATCTTGGCAGGTTCCTAACTTTCAGCGTAAAGGTTTAGGCGACAATGTTGAGATGGTTCTGTTGGATGAACGTGGTGGAAGGATCCATGCCACTGTGAAGGGAACTCTTCAGGTTCGGAAAAAAATCACGGATGGAGAAGTGTATTTTATTAAAAATTTCGGAGTTGGATTCAGTAGCGGTAATTTTAGGCCAACCCGTCATGAGTATCATCTGTCTTTCAACTTGAGGACTGATGTTAGATCAATTGTTCAACCTAATTTTCCTGCCAATGTATTTGATTTTGTTGATTACGATGTCATTGAGAAAGAATCGTCTGATTCTCCTTATTTAGTAGACGTCATTGGTTTACTGTCAGGAGTTGGGGAAGTGTGTGAGCATGTAGTTTCCGGCAGGAAGACAAAGATGATTGTGGGTCACAAGTTGGAATGCACTTTGTGGGAGCATTATGTGGATGAGGTACAGACTTTTTTGGCAAGCAATGACACTCCTCATAAGCTTTTGTACCGTGTTATAAATCGATGGGTGTTCATTGTTTCTGTTTTGGATAGTCTATCGTCTAATGGTGTGGAAAGTAGTTTGAAATTGACTCAATTGTCTACTCAGTCCTCATATTCATACGAAAGTGATTTCCTTAAGGAGACCGATAGAAAGTCAATCAATGATATCAAGCTGTGTAGTGAGGTAACCACGTGCATCACTTATGGGACTATAAAATCAATTGAAAGCAGACACAACTGGTGGTACAGGTCGTGCAATAGGTGTCCATTTTCCGTTTGTGAAGATTTTGAAAAAGGATTTAGTGTTCAAGTCAGAGTTGTGGATAACACGGATTCTGCTTCTTTTTTGCTGTTTGATCGAGACTGTGTTACTTTGTTGGGAACAAGTGCTGTTGAATTGCGCGAGTTGCATTTCAAAAGGGGTGCTGATACAGAACAATATCCCGAGCAACTAAATGTTCTGAATGAGAAATCCATGCTGTTTAAGATTAATGATGAAGCAACTTTCGATAATGCTCGCGAAAATGAAATTTTATCATTAGAACCAGAAAAGGCTGCGGATGTTGAAAGTCAGACGTGTGACAGTGCTGATGTTGGTGACATTTCTCTAACTTTATTGACACCTGTGATGAATTCTCATGTTCTAATGTTGAGGAATTTAAGTATTCGGTTTGATGCGAAAGCGTATACAAATTCTCAGTGA 1278 0.392 MVSRYDFIKDLNPTKEDWRIKVKVVRSWQVPNFQRKGLGDNVEMVLLDERGGRIHATVKGTLQVRKKITDGEVYFIKNFGVGFSSGNFRPTRHEYHLSFNLRTDVRSIVQPNFPANVFDFVDYDVIEKESSDSPYLVDVIGLLSGVGEVCEHVVSGRKTKMIVGHKLECTLWEHYVDEVQTFLASNDTPHKLLYRVINRWVFIVSVLDSLSSNGVESSLKLTQLSTQSSYSYESDFLKETDRKSINDIKLCSEVTTCITYGTIKSIESRHNWWYRSCNRCPFSVCEDFEKGFSVQVRVVDNTDSASFLLFDRDCVTLLGTSAVELRELHFKRGADTEQYPEQLNVLNEKSMLFKINDEATFDNARENEILSLEPEKAADVESQTCDSADVGDISLTLLTPVMNSHVLMLRNLSIRFDAKAYTNSQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4874g00002 425 Gene3D - 5 107 IPR012340 -
Gabi4874g00002 425 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Gabi4874g00002 425 Pfam Domain of unknown function DUF223 43 133 IPR003871 -
Gabi4874g00002 425 Gene3D - 227 382 IPR012340 -
Gabi4874g00002 425 SUPERFAMILY Nucleic acid-binding proteins 240 357 IPR012340 -
Gabi4874g00002 425 CDD RPA1_DBD_A_like 19 105 - -
Gabi4874g00002 425 Gene3D - 112 226 IPR012340 -
Gabi4874g00002 425 PANTHER OS03G0429900 PROTEIN 7 162 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4874g00002 Gabi-Chr4874 10559 13490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4874g00002 1 356 Core DNA Replication Machinery Family AT5G08020 22.328 2.89e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4874g00002 - - soe:130461853 204.142