Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4873g00005 ATGGATTCTCCGTTGTCATTTCAAATCCCCTCGAATACCTTCCCTCACCAACCACCAGGCATTCCGATTTCCACACCCACTTCTGCAGCTGCTGGAGCTCCAACCCTAAACTTATTGGTGCCTAAACCCGAGCCTTTTGACGAATTCCTAGCGACAACACACGAGCCTCAGCCTCAGCCTCAGCCTCAACAACAAGAACCCGATTTGTACTCCGAGTTTGATCGGGTCTCCGAGCTCTTCCGGGTTGCCTTCGGCAAAACCTTGCAACAGCAGTTCGGAGTTGTCGAGGATGTTGTTGTTCCTGCGGAACCAATTTCGGACTTAAACCCGGACCCGAATTCTGTTGACCCGGTTGTTCGGGACCCGAACTCGCAAGCAATCGTTCCAATGCAGCAGCTGGAATCATCTGCGGGGGCGGGGGCGGGGGCGGTGGCCAGGCGGAGGCAGAACCGGAGGAAAGAGCTGGTGAGGATGATAGATCTGGGAATGAAGGATCAGATGCATTTCCGGGAGGAGGTGAGGAGGACGAGGATGATCTATGACTCGCTGCGCGTTTTGGCGACTGTGGAGGACGAGAAGAGAGCGGCCGCAGCGCCTACTGAGCCAGAGGATGACAATGGCAACAGACGACGGCGCGTGCGGGTGCGAGGTGACCTGACAGCGGCAGCAGCCATGAGGGAGCGTGGTTTGTGGCTGAACCGCGATAAGCGGATCGTTGGGGCAATTCCTGGAGTGTGCGTTGGAGATGTGTTCCTATTTAGGATGGAGTTGTGTGTGCTTGGTTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCCAGTAGCATGAGCTCCAATGGGGAGCCAATAGCTACTAGTGTGATTGTCTCGGGTGGATATGAGGATGATATGGATAGTGGCGAGGTTATAATCTACACTGGTCATGGAGGTCAGGATAAGAATTCTAACAGGCAAGTGGCGCACCAGAAATTGGAGGGAGGAAACCTTGCATTGGAAAGGAGTATGAATTATGGGATTGAGGTGCGTGTTATTCGGGGGATGAGGTATGAGGGAAGTGCCTCCGCCGCAGGTAAGGTTTATGTCTACGATGGATTATATAGGATTGTTGATTGCTGGTTTGATGTGGGCAAATCTGGTTTTGGAGTTTATAAGTATAAGCTTTGGAGAATTGATGGGCAAGCCAAAATGGGTAGTGCTGTTCTTAGAAATGCTAGTGATATTAGAAAAAGTGGACCGGATTTCAAACCAATTCATTGTGTTTCTGTTGACCTTTCAAACAAGAAGGAGAATGTTTCTGTTCGTCTTTTCAATGACATAGATGACAATGAGGAACCTCTTTGTTTTGAGTATCTTCCAAGAACTACTTTTCCTCAGTTTGTGTTTCATCAAAGTGGAAAAGCTACTGGTTGTGATTGTGTAGATGGTTGTGCTGATGGCTGCTTTTGCTCTATGAAAAATGGAGGCGAGTTTCCTTATAATCAACATGGCTTTCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTCTGCAGCTGTCCTCCTCATTGTCGGAATCGAGTTACACAAAAGGGACTGAAAAATAGGTTGGAAGTGTTTAGGTCTAGGCAGACAGGGTGGGGAGTTAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATTTGTGAGTATACGGGGGTTGTTTTGACTAGGGAGCAAGCGCAAATTTTGACAATGAATGGTGACTCATTGGTATATCCTGATCGGTTTTCAGAAAGATGGGCAGAATGGGGGGATTTATCTCAGATATACTCTAATTATGTGCGTCCATCTTATCCATCAATTCCTCCTTTAGATTTTTTTCTGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCAACTCCAAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTTGCTGATGAGCAGACAGGCAAGCTCTCCATATGTAACTGA 2061 0.4765 MDSPLSFQIPSNTFPHQPPGIPISTPTSAAAGAPTLNLLVPKPEPFDEFLATTHEPQPQPQPQQQEPDLYSEFDRVSELFRVAFGKTLQQQFGVVEDVVVPAEPISDLNPDPNSVDPVVRDPNSQAIVPMQQLESSAGAGAGAVARRRQNRRKELVRMIDLGMKDQMHFREEVRRTRMIYDSLRVLATVEDEKRAAAAPTEPEDDNGNRRRRVRVRGDLTAAAAMRERGLWLNRDKRIVGAIPGVCVGDVFLFRMELCVLGLHGQIQAGIDYLPSSMSSNGEPIATSVIVSGGYEDDMDSGEVIIYTGHGGQDKNSNRQVAHQKLEGGNLALERSMNYGIEVRVIRGMRYEGSASAAGKVYVYDGLYRIVDCWFDVGKSGFGVYKYKLWRIDGQAKMGSAVLRNASDIRKSGPDFKPIHCVSVDLSNKKENVSVRLFNDIDDNEEPLCFEYLPRTTFPQFVFHQSGKATGCDCVDGCADGCFCSMKNGGEFPYNQHGFLVRGKPLIFECGPFCSCPPHCRNRVTQKGLKNRLEVFRSRQTGWGVRSLDLIHAGAFICEYTGVVLTREQAQILTMNGDSLVYPDRFSERWAEWGDLSQIYSNYVRPSYPSIPPLDFFLDVSTMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEQTGKLSICN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4873g00005 686 SMART preset_2 422 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4873g00005 686 Pfam Pre-SET motif 426 522 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4873g00005 686 SMART G9a_1 235 394 IPR003105 -
Gabi4873g00005 686 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4873g00005 686 MobiDBLite consensus disorder prediction 193 212 - -
Gabi4873g00005 686 SUPERFAMILY PUA domain-like 221 401 IPR015947 -
Gabi4873g00005 686 Pfam SAD/SRA domain 239 394 IPR003105 -
Gabi4873g00005 686 SMART set_7 530 679 IPR001214 GO:0005515
Gabi4873g00005 686 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 90 686 IPR025794 GO:0016571
Gabi4873g00005 686 ProSiteProfiles SET domain profile. 530 673 IPR001214 GO:0005515
Gabi4873g00005 686 SUPERFAMILY SET domain 416 674 IPR046341 -
Gabi4873g00005 686 Gene3D - 237 398 IPR036987 -
Gabi4873g00005 686 ProSiteProfiles YDG domain profile. 240 390 IPR003105 -
Gabi4873g00005 686 Pfam SET domain 541 673 IPR001214 GO:0005515
Gabi4873g00005 686 Gene3D SET domain 399 686 IPR046341 -
Gabi4873g00005 686 ProSiteProfiles Pre-SET domain profile. 469 527 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4873g00005 686 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 144 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4873g00005 Gabi-Chr4873 77261 90066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4873g00005 142 675 Su(var)3-9 homologs AT5G04940 36.429 1.99e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4873g00005 SAD_SRA 1.1e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4873g00005 K11420 - gmx:100785015 940.258