Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi486g00001 GGGACACTTAATGATGGAAGAATTATTGCCGTGAAACAACTATCCGTAGCATCCCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCTACTATATCTGCTGTGCAACATCGTAATCTTGTCAAATTATACGGATGTTGCATTGAAGGGAGTAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAGAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACGCTCAATTGGTCCACACGCTATGATATCTGCTTGGGTGTTGCAAGAGGTTTAACTTACTTACATGAAGAATCACGACTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATACTGCTTGATCATGAGCTTGTCCCAAAAATATCTGATTTCGGGTTGGCCAAATTATATGATGATAAAAAGACCCATATAAGCACCCGGGTGGCTGGGACAATTGGATATCTTGCACCGGAGTACGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTATTTTCCTTTGGTGTTGTGGCTCTAGAGTTAGTTAGTGGGAGGCCTAATTCTGATTCTAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAACAACTGCGTAACTGATCTGGTAGATCCTGGACTATCAGAATTCAATAAGGAAGAAGTAAAACGCATGGTGGGAATAGCACTTTTGTGCACTCAGACATCACCAACATTACGGCCATCAATGTCACGTGTGGTGGCAATGCTTTCGGGAGATATTGAAGTGAGCACTGTAACTACAAGGCCTGGATACTTGACTGACTGGAAATTTGATGATGTGAGTAGCTTCATGACTCACATTGCAACCAAAGCATCAGATACAAGTTATTACAACTCATCAGCAAGTACCAGCATAGTTGGTGGTGCAGACCATTCACCAATAGATGCTTCTAAAGCTATCCTTCATGAGAGTCTTGACGAGGGTAGGTAA 975 0.4185 GTLNDGRIIAVKQLSVASHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNCLTLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDHELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHENNCVTDLVDPGLSEFNKEEVKRMVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTTRPGYLTDWKFDDVSSFMTHIATKASDTSYYNSSASTSIVGGADHSPIDASKAILHESLDEGR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi486g00001 324 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 284 - -
Gabi486g00001 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Gabi486g00001 324 FunFam Putative LRR receptor-like serine/threonine-protein kinase 60 263 - -
Gabi486g00001 324 ProSiteProfiles Protein kinase domain profile. 1 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi486g00001 324 CDD STKc_IRAK 1 251 - -
Gabi486g00001 324 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi486g00001 324 Gene3D Transferase(Phosphotransferase) domain 1 60 262 - -
Gabi486g00001 324 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Gabi486g00001 324 SUPERFAMILY Protein kinase-like (PK-like) 4 281 IPR011009 -
Gabi486g00001 324 Pfam Protein tyrosine and serine/threonine kinase 7 251 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi486g00001 Gabi-Chr486 5059 17514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi486g00001 1 324 Receptor kinase-like Gene Family AT1G56120 69.512 1.60e-152 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi486g00001 PK_Tyr_Ser-Thr 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi486g00001 - - lja:Lj3g3v0397040.2 576.63