Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4868g00006 ATGGAAAGCATGCTTAAGTTTGTTCCTCTCATTTGTTTTATGACCATGCTTAAATTTGTATTAGGAAATGCAGCAGCTCATCCTGAAGGTGCTGGTGGCATGAATTTCAAGGGCATAATAGGAGCTATTGCAGACCAAAATTCTCGCAATGGTAAAGAGGAGATAGTGGCCATTGAGATGGCATTGGAGGATTTCTATCATTACAGCAATCAAAGGTTTGTTCTACACATAAGGAACTCTCAAGGGGATCCCCTTAAGGCTGCTCTTGCAGCTAGAGATCTTATTAATGAAATGCACGTGCAAGCAATTATAGGACCACAAACATGGGAAGAGACATCTTTAGTGGCTGAGGTTTGTAACCAAAGTATGACGCCAGTTCTATCTCTTGCTGATGCAACTCCAAAGTGGTCGACTTTGAAATTGCCCTTCTTGTTGCAAGCCTCACCTAGTCAATTTAAGCAAATGAAAGTAGTAGCTGCTATTGTTCAGTCCTGGGAATGGTATAGTGTTAACATAATATATGAAGGTAGGGATGCCTCATCCTCACAAGTTATATCTCATCTCTATAGAGCCCTCAGTGAAGCAGGTGTAAGTATAAGCAATCTTTTAGCCATCCCACATTTTGTTTCCCTTTCATTGTCCCAAGAACTAGAGAAGCTTAGAGAAGGGCCATGTAGAGTCTTTGTTGTTATTTCTTCCCTCCCTTTGGCCATAAACCTGTTTGAAACTGCAAATAAAATGAATATGATAGAGAAAGATTCTGTGTGGATCATAACTGATCCTTTTACAAGCCTTGTCCATTCCTTGAATGCATCCACTATATCTTCAATGCAAGGGATCCTTGGAATCAAGAGCTACATCCCAGAAACAGGACATCAGTTTAAGGACTTTTACCATAAATTTGGCCAAAAGTTTAGCTCAGAGAACCCTTGGGAATTCAACAATGAACCTGGTGTATTTGCAGCACATGCTTATGATGCTGCATGGACTGTGGCTCTAGCCATGAGCCAAATCAACAGTAAAGGGGGCCAAGTTTTGCTAGATAAGATTTTGCTTAATAGTTTTATTGGCTTAAGTGGAAAAATTCAGTTCACTGACCAAAAGTTAGCTCCTTCACATACTTTTCAGATCATCAATGTGATAGGGAATGGTTACAAGGAAATTGGGTTCTGGTCAGATGGACTAGGTTTCTCAAATAGTATTGGCCAAAATGCTACTTATAGTTTTTCAATGAAGGAACTGGGACAACTTTTATGGCCAGGAAGACCTTGGGACACTCCAAGAGGATGGGCCCTTCCTACAAGTGATAAACCACTACGAGTTGGGGTCCCTGCTTTGGCCACATTGAAACAATTTATAAATATAAATCAAGATCATTCTACAAATACTACCTCCTTCGACGGATTTACTATTGATCTTCTTAGAGAAACTGTGGAGTTGTTGCCCTACCATTTGCCATACAAATTATATGCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTTTATTTAAAGAATTTCGATGCAGCGATTGATGTAACAATAATTTCATATCGATATCAGTATGCTGAATTCACTCAGCCATACACTGATCCGGGAGTTGTGATGGTAGTGCCCATTAAGTCAAAAGCAGGACATAGAGCTTGGTTATTCGTGAAGCCATTTACAAAGACCATGTGGATTCTAATAGCGGCCATGATTATCTACAATGGATTTGTTCTATGGATGTTAGAGAGACACCATTGGCCTGAACTTAAGGGTTCCATGCTCAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTCATCAGCTTTAATGGTGGTAAGTTACACCACAGTTTATCAAGGATGGCTATGGTGGTGTGGCTATTTGTAGCACTCATCATAACACAGTCTTACACAGCTAACCTTACCAGCATGCTAACTGTTGAAAGGCTTGAACCCTTAGTAGATAATGTTGATCAGCTACGGAATGGCAATGCTGTGGTTGGATACACTACAGGATCCTTCTTGCAAAAATATCTGCAGGAAGTGTTACACTTCCAACCTGCAAAAATGAAGCAATTTAGCTCACTTGAAGAGTTTGCAGAAGCTCTCAGAAAGAAAGAAATAGCAGCTGCATTTCTTGAAGTTCCTTGGGCCAAAATTTTCCTTTCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTATGTATAAATTTGGAGGATTTGGATTTGCATTTCCAAGGGGGTCTCCATATCTTCCAAGTGTAAACAAAGCACTGCTAAGTTTGTTTGAAACTGGCAAGCTTCTTGAATTAGAGAACCAAATGCTTGCATCAGAGAAATGTGAAGACACAGAACCAGATGCAGACTCTGCAAGTCTCAGTCCCAATAGCTTCTGGGCCCTTTTCACATTGACAGCAGGCACATCAACAATTTCTCTCTTGGTTTACATTGTGGGCATGTATTATTCAAACCGTGAAGAGAAAACATCATGGAGACTAATTATGGTAATGATTCAACAATATGAATATGCAAAGAGACGATTCTCCAGAAGAGAAAGTGATGTTACAGAAAGTTCTATGTACTCTCCAAATGCACATGCCACGCCAACTCAAGTTTGA 2616 0.4018 MESMLKFVPLICFMTMLKFVLGNAAAHPEGAGGMNFKGIIGAIADQNSRNGKEEIVAIEMALEDFYHYSNQRFVLHIRNSQGDPLKAALAARDLINEMHVQAIIGPQTWEETSLVAEVCNQSMTPVLSLADATPKWSTLKLPFLLQASPSQFKQMKVVAAIVQSWEWYSVNIIYEGRDASSSQVISHLYRALSEAGVSISNLLAIPHFVSLSLSQELEKLREGPCRVFVVISSLPLAINLFETANKMNMIEKDSVWIITDPFTSLVHSLNASTISSMQGILGIKSYIPETGHQFKDFYHKFGQKFSSENPWEFNNEPGVFAAHAYDAAWTVALAMSQINSKGGQVLLDKILLNSFIGLSGKIQFTDQKLAPSHTFQIINVIGNGYKEIGFWSDGLGFSNSIGQNATYSFSMKELGQLLWPGRPWDTPRGWALPTSDKPLRVGVPALATLKQFININQDHSTNTTSFDGFTIDLLRETVELLPYHLPYKLYAFNDTYDNLVKQVYLKNFDAAIDVTIISYRYQYAEFTQPYTDPGVVMVVPIKSKAGHRAWLFVKPFTKTMWILIAAMIIYNGFVLWMLERHHWPELKGSMLNQTGTMAWLALTPLISFNGGKLHHSLSRMAMVVWLFVALIITQSYTANLTSMLTVERLEPLVDNVDQLRNGNAVVGYTTGSFLQKYLQEVLHFQPAKMKQFSSLEEFAEALRKKEIAAAFLEVPWAKIFLSKYCKEFIQAGPMYKFGGFGFAFPRGSPYLPSVNKALLSLFETGKLLELENQMLASEKCEDTEPDADSASLSPNSFWALFTLTAGTSTISLLVYIVGMYYSNREEKTSWRLIMVMIQQYEYAKRRFSRRESDVTESSMYSPNAHATPTQV 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4868g00006 871 SUPERFAMILY Periplasmic binding protein-like II 416 772 - -
Gabi4868g00006 871 FunFam Glutamate receptor 154 315 - -
Gabi4868g00006 871 Gene3D - 549 693 - -
Gabi4868g00006 871 Pfam Bacterial extracellular solute-binding proteins, family 3 463 773 IPR001638 -
Gabi4868g00006 871 CDD PBP1_GABAb_receptor_plant 40 401 IPR044440 -
Gabi4868g00006 871 CDD GluR_Plant 437 775 - -
Gabi4868g00006 871 SMART GluR_14 440 777 IPR001320 GO:0015276|GO:0016020
Gabi4868g00006 871 FunFam Glutamate receptor 549 687 - -
Gabi4868g00006 871 Pfam Ligand-gated ion channel 774 806 IPR001320 GO:0015276|GO:0016020
Gabi4868g00006 871 Gene3D - 46 372 - -
Gabi4868g00006 871 FunFam Glutamate receptor 434 548 - -
Gabi4868g00006 871 Gene3D - 150 392 - -
Gabi4868g00006 871 Gene3D - 448 548 - -
Gabi4868g00006 871 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 832 IPR015683 -
Gabi4868g00006 871 Pfam Receptor family ligand binding region 57 382 IPR001828 -
Gabi4868g00006 871 SUPERFAMILY Periplasmic binding protein-like I 40 430 IPR028082 -
Gabi4868g00006 871 PIRSF IGluLR_plant 2 870 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4868g00006 Gabi-Chr4868 98321 102446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4868g00006 40 865 Ion Channels AT2G29110 32.411 1.83e-144 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4868g00006 - - gmx:100799573 1160.98