Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4860g00005 ATGGATAGGATTCAGGATAAGGCAGATGAAAGTAATAAATCTCAGCGTTCCTCATCTTCAGTGGTAGCTCTAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAATGGGCACTTAATAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGCTGATACATGTCCATGCTGGTATAAAAGGAGTTCCGACACCAATGGGAAATATGATACCTCTTTCACAAGTGCGAAATGATATAGCAACTGCTTTCAGAAAGGAAGTGGAGTGGCAAACAAATCAAATGCTTCTACCTTTTAAGAAAATGTGTGAGCAGAGAAAGGTGCATGTAGATGTTGTACCGATTGAATCAGATGATGTGGCAACTGCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACTAAACTTGTTGTTGGAGCTTCATCTCGTAGCTTATTTACAAGTAAACAGAAGGGTATGTCAGCGAAAATCTCAGTATCCACTCCAAGATTTTGTACAGTTTATGCTGTTTCAAAAGGAAAATTGTCCATACGGCCATCGGATGTACAGATTGATGGAAGCATTATAGATGATGCTAGTGAAACCAGTTTTTCCTCCAACAGCCCATCAAACTATGCTTCCACCTCTCAGACAGAAACTGGCTCAATTGCATCATACGCTACTTTACATTCCTCTTCCCTAGCAACGCAGCGATTTCAAGCTCTTTCAAGTATAAATCAGACCCTTCTAAGCACATCTCCTGGCTTAAATGAAACTAAACATTCTAGAGGTCAGTCTGTAGATCTTGGGAGAGAAATTGCTGCTACAAGTTCTGCCAGACACTCGGATATTGATTCTGCTCTGAGTCGGGCCTCTAGTTGCAAAAGCATTATTTCAGACACTGAATCTTGGATTTATGATCAAATTTCTGGCAAGGATGTGTCACTAGCAACTGAACCTCCGTCACCTAATAGGCAGGCAAATATTAACCTTGAGCTGGAGAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCATTAGCTCAAAGTGAGAACATTGATGCATCACGAAAGCTGAATGACCTAAACAAGAGGCGATCAGAAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGATGGCCAAAGAATTAGCAAGACAAGAGAGAGAGAGACATCAAGCTGCAGCAAGAGAAGCTGAATATTTAAAAGAATGTGCTGAAAGAGAAGCTGCAGAAAGAAAAGAAACGGAGTTGAAAGCTGTTCATGCCGCCAAAGAGAAAGAAAAGCTCGAAGATGCTCTAACTGGTTCCATGCCCCAGTACCGCAAATTTACATGGGATGAAATAGTCTCAGCTACTTCATCTTTCTCTGAAGATCTTAAAATTGGAATGGGAGCATATGGAATTGTGTATAAGTGCACTTTGTATCATACTACTGTTGCTGTTAAAGTTCTCCACCCTAATGGAAACCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGCGCATGTTTTGATCACGGATGCATTGTATATGAATATATGGAGAATGGTAACTTGGAGGAGAGACTACTCCGGAAAAACAGTACTCCCCCAATCCCATGGTTTGAGAGGTATCGAATAGCTTGGGAAATTGCATCAGCTCTTGCATTTCTTCACAGCTCAAAGCCAGAACCTATTATCCATCGCGATTTGAAACCAGCAAACATCTTGCTCGGTCGTAATCTTGTCAGCAAGATTGGTGATATTGGCCTTTCTACTGTGCTCCATTCAGATAATTCATCTACCATGTATAAGGACACAGAACCTGTGGGAACACTATGCTACATAGATCCTGAGTATCAAAGAACTGGGTTGATATCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTACTCATGTGGTTGAAACAGCAATTGACGGAGGAAATTTGGCAGATATATTGGATCCAGAAGCAGGAACTTGGCCATTTCAAGAGACGCTAAACTTGGCTCGGTTAGGACTGAGCTGTGCCGAACTTCGGCGTAGAGACCGGCCTGATTTGAAAGATCATGTTCTTCCAACACTAGAGAGATTGAAAGAAGTTGCTGCTAGGAGCCAACATTCTGCTCCAATAGTTACTGTTAAATCCAGATCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGATAACGACAAATCACCAATGACAAATATGGCTTTGCCTCATAAGAATCTGATTCCTAATTACACACTTCTGTCAGCAATTATGGAGTGGAAGTCCAGAGAAATATGA 2424 0.4105 MDRIQDKADESNKSQRSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHAGIKGVPTPMGNMIPLSQVRNDIATAFRKEVEWQTNQMLLPFKKMCEQRKVHVDVVPIESDDVATAVAEEVAKGAITKLVVGASSRSLFTSKQKGMSAKISVSTPRFCTVYAVSKGKLSIRPSDVQIDGSIIDDASETSFSSNSPSNYASTSQTETGSIASYATLHSSSLATQRFQALSSINQTLLSTSPGLNETKHSRGQSVDLGREIAATSSARHSDIDSALSRASSCKSIISDTESWIYDQISGKDVSLATEPPSPNRQANINLELEKLRIELRHAQGMHALAQSENIDASRKLNDLNKRRSEESMKMKEIIAKEEMAKELARQERERHQAAAREAEYLKECAEREAAERKETELKAVHAAKEKEKLEDALTGSMPQYRKFTWDEIVSATSSFSEDLKIGMGAYGIVYKCTLYHTTVAVKVLHPNGNRKSKQFQQELEILSRIRHPNLLLLLGACFDHGCIVYEYMENGNLEERLLRKNSTPPIPWFERYRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNSSTMYKDTEPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIDGGNLADILDPEAGTWPFQETLNLARLGLSCAELRRRDRPDLKDHVLPTLERLKEVAARSQHSAPIVTVKSRSPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQDNDKSPMTNMALPHKNLIPNYTLLSAIMEWKSREI 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4860g00005 807 SUPERFAMILY RING/U-box 736 805 - -
Gabi4860g00005 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Gabi4860g00005 807 ProSiteProfiles U-box domain profile. 736 807 IPR003613 GO:0004842|GO:0016567
Gabi4860g00005 807 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Gabi4860g00005 807 Gene3D HUPs 13 149 IPR014729 -
Gabi4860g00005 807 Pfam U-box domain 738 804 IPR003613 GO:0004842|GO:0016567
Gabi4860g00005 807 Gene3D Transferase(Phosphotransferase) domain 1 526 735 - -
Gabi4860g00005 807 SMART Ubox_2 740 802 IPR003613 GO:0004842|GO:0016567
Gabi4860g00005 807 Pfam Protein tyrosine and serine/threonine kinase 458 653 IPR001245 GO:0004672|GO:0006468
Gabi4860g00005 807 CDD STK_N 21 173 - -
Gabi4860g00005 807 PANTHER OS02G0152300 PROTEIN 21 801 - -
Gabi4860g00005 807 ProSiteProfiles Protein kinase domain profile. 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4860g00005 807 SUPERFAMILY Protein kinase-like (PK-like) 435 708 IPR011009 -
Gabi4860g00005 807 CDD RING-Ubox_WDSUB1-like 738 792 - -
Gabi4860g00005 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 736 807 IPR013083 -
Gabi4860g00005 807 CDD STKc_IRAK 459 717 - -
Gabi4860g00005 807 Gene3D Phosphorylase Kinase; domain 1 422 525 - -
Gabi4860g00005 807 Coils Coil 326 360 - -
Gabi4860g00005 807 SMART serkin_6 453 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4860g00005 807 Coils Coil 372 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4860g00005 Gabi-Chr4860 92328 101548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4860g00005 1 804 U-box Gene Family AT4G25160 51.483 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi4860g00005 PK_Tyr_Ser-Thr 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4860g00005 - - gsj:114409387 1275.77