Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4859g00004 ATGAGTTTCCCGAATGGTTCTTCACCTCGCCGGCACACGGCGGAGAATGATATAGAGGCTGGCCCGGCGACTCGCCTCTCCACTGACGTCGACGACGGCGATTTCTCCGATCCGTTTGATATTGCCAGAACCAAGCACGTTTCGATTGAACGCCTCAGGCGTTGGAGACAAGCAGCACTTGTGCTTAATGCTTCTCGGCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGAGCGCATGCACAAGCTATCAGAGCAGCATATCTTTTCAAGGCAGGTGTTGGGGGGCCAGTGAATGAATCTACACAACCTCCTTCGACCTCCACTGGTGAATTTCCCATTGGACAAGAGGAACTTGCTTCAATTTCAAGGGATCGTGATGCTGCTGCTCTGCAGCAATATGGAGGGGTTGTGGGGGTGTCAAATTTGTTGAAAGCCAATTTAGAGAAGGGGATTCCTGGTGATGATGCTGACTTACTAAAACGGAAAAATGAATTTGGTTCCAACAATTATCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTTTATGGGATGCTTGCAAGGACCTGACCTTGATTATTTTAATGGTAGCTGCAGCTGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCCACAAGCGATTATAAGCAGTCTCTTCAGTTTCGAGAGCTAAATGAAGAGAAGAGAAATATACGCCTGGAGGTTATTAGAGGAAGTAGAAGGGTTGAGATCTCAATATATGATATTGTTGTTGGGGATGTGATACCTCTTAATATTGGTAACCAGGTTCCTGCTGATGGAATTCTGATCACTGGTCACTCTCTTGCAATTGATGAGTCAAGTATGACTGGGGAGAGCAAAATTGTGTATAAGGATTCTAAAGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTAACTGGTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGCGAAGAAACACCTTTGCAGGTCCGCTTAAATGGAGTAGCCACCTTCATTGGTATAGTTGGACTCTCTGTTGCTGTTGTTGTCCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAAAAATCCAGACGGGTCGGTTCAATTTGAAGCAGGGAAGACTAAAGTTGGTCATGCTATTGATGGAGCAATTAAGATAGTAACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAGGGGCTCCCATTAGCAGTTACTTTGACACTGGCCTACTCAATGAGAAAAATGATGGCAGATAAAGCTCTGGTGAGGAGGCTTTCTGCGTGTGAGACAATGGGCTCTGCCACAACAATATGCAGCGATAAGACTGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTATGCTGGGGGTAAGAAGATTGATCCTCCCAACAAGTTGGAGCTCTCTTCTATCCTTCACTCTCTGCTCATTGAAGGTATTGCACAGAACACTAATGGCAGTGTTTATATACCCGAGGGTGCTAATGATATCGAGGTTTCTGGATCCCCAACAGAAAAGGCAATTTTACATTGGGGAGTATTGCTTGGGATGAATTTTGCCGCTGCTCGGTCAGAATCCTCAATTATTCATGTCTTTCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATACAGACGGCTGATTCTGAAGTCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACAGGGTACATTGATGCAAATGACCAATTGGTGGAGATGGATGAGGAGAAGATGACATTTTTCAAAAAAGCTATTGAAGAAATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCGTATAGATCATACGAAAAGGAGAAGGTTCCGACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGAATGATCTTGTTTTACTAGCTATTGTTGGTCTTAAGGATCCTTGTCGACCTGGTGTCAAAGATGCCGTTCAGCTTTGCCAAAAAGCTGGGGTTAAGGTAAAAATGGTCACCGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTTGCTGAAGCTACAGAACCAAACATCATTGAGGGAAGCACATTTCGTGCCTTGTCAGATGCACGGAGAGAAGAAATTGCTGAAGCGATATCGGTAATGGGACGGTCATCTCCCAATGACAAACTGTTGCTTGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTTAGATGGGGGCGGTCAGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCTGCAGTTTCCACTGGTGATGTCCCACTAAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACTTTGGGAGCACTAGCATTGGCGACTGAACCGCCCACTGATCACCTGATGGATCAGCCTCCAGTGGGCCGAAGAGAACCTCTCATCACAAATATTATGTGGAGGAATTTACTGATACAGGCAATGTACCAAGTGTCTGTCCTGCTTGTTCTCAATTTCCGAGGTATTAGCATACTGGGCCTGAGGCATGAGAAGCATGACCATGCGGTCAAAGTAAAAAACACTTTGATCTTCAATGCTTTTGTTATCTCTCAAATCTTTAATGAATTCAATGCACGAAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACAAAAAATTACCTCTTTATGGGGATAGTGGGATTAACTGTTGTGCTTCAGATTATCATCATTGAATTTCTTGGGAAGTTCACTTCAACAGTCAGGCTTAATTGGAAGCAGTGGCTCATTTCTATCATTATTGGATTTCTTAGTTGGCCTATTGCTGTGGTCGGGAAATTGATACCAGTACCAGCAACTCCCCTCAATAACATTTTTTCAAGATTCCACACTCAAAGAACTTCAAGAAGGAAGGAACCTGAGGCTTCTCAATAG 3258 0.4328 MSFPNGSSPRRHTAENDIEAGPATRLSTDVDDGDFSDPFDIARTKHVSIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAGVGGPVNESTQPPSTSTGEFPIGQEELASISRDRDAAALQQYGGVVGVSNLLKANLEKGIPGDDADLLKRKNEFGSNNYPRKKGRSFLMFLWDACKDLTLIILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTATSDYKQSLQFRELNEEKRNIRLEVIRGSRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVYKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARYFSGHTKNPDGSVQFEAGKTKVGHAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPNKLELSSILHSLLIEGIAQNTNGSVYIPEGANDIEVSGSPTEKAILHWGVLLGMNFAAARSESSIIHVFPFNSEKKRGGVAIQTADSEVHIHWKGAAEIVLACCTGYIDANDQLVEMDEEKMTFFKKAIEEMAADSLRCVAIAYRSYEKEKVPTNEELLAHWSLPENDLVLLAIVGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFAEATEPNIIEGSTFRALSDARREEIAEAISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSTGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDQPPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGISILGLRHEKHDHAVKVKNTLIFNAFVISQIFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIIIIEFLGKFTSTVRLNWKQWLISIIIGFLSWPIAVVGKLIPVPATPLNNIFSRFHTQRTSRRKEPEASQ 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4859g00004 1085 CDD P-type_ATPase_Ca_PMCA-like 169 927 - -
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 47 103 - -
Gabi4859g00004 1085 Gene3D - 47 102 - -
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 9 plasma membrane-type 341 511 - -
Gabi4859g00004 1085 PANTHER CATION TRANSPORTING ATPASE 113 1058 - -
Gabi4859g00004 1085 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 79 IPR024750 GO:0005516
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 688 839 - -
Gabi4859g00004 1085 NCBIfam calcium-translocating P-type ATPase, PMCA-type 138 1058 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 497 694 - -
Gabi4859g00004 1085 Gene3D - 497 694 IPR023299 GO:0000166
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 811 1060 - -
Gabi4859g00004 1085 Pfam E1-E2 ATPase 265 465 - -
Gabi4859g00004 1085 SMART Cation_ATPase_N_a_2 143 217 IPR004014 -
Gabi4859g00004 1085 Pfam haloacid dehalogenase-like hydrolase 484 808 - -
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 244 363 - -
Gabi4859g00004 1085 Gene3D - 484 839 IPR023214 -
Gabi4859g00004 1085 SFLD p-type atpase 469 846 IPR044492 -
Gabi4859g00004 1085 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Gabi4859g00004 1085 FunFam Calcium-transporting ATPase 195 252 - -
Gabi4859g00004 1085 Gene3D - 168 363 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 687 698 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 311 325 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 709 719 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 818 830 - -
Gabi4859g00004 1085 PRINTS P-type cation-transporting ATPase superfamily signature 794 813 - -
Gabi4859g00004 1085 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4859g00004 1085 SFLD Haloacid Dehalogenase 469 846 - -
Gabi4859g00004 1085 SUPERFAMILY Calcium ATPase, transduction domain A 266 360 IPR008250 -
Gabi4859g00004 1085 Gene3D - 195 1050 - -
Gabi4859g00004 1085 Pfam Cation transporting ATPase, C-terminus 879 1056 IPR006068 -
Gabi4859g00004 1085 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1058 IPR023298 -
Gabi4859g00004 1085 NCBIfam HAD-IC family P-type ATPase 427 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi4859g00004 1085 NCBIfam HAD-IC family P-type ATPase 761 874 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi4859g00004 1085 PRINTS Sodium/potassium-transporting ATPase signature 605 623 - -
Gabi4859g00004 1085 PRINTS Sodium/potassium-transporting ATPase signature 230 250 - -
Gabi4859g00004 1085 PRINTS Sodium/potassium-transporting ATPase signature 480 501 - -
Gabi4859g00004 1085 Pfam Cation transporter/ATPase, N-terminus 145 212 IPR004014 -
Gabi4859g00004 1085 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 699 IPR023299 GO:0000166
Gabi4859g00004 1085 SUPERFAMILY HAD-like 485 899 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4859g00004 Gabi-Chr4859 73345 98428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4859g00004 7 1065 Primary Pumps ATPases AT5G57110 74.460 0.0 1603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4859g00004 K01537 - gmx:100792945 1855.11