Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4858g00011 TACCAACCTCCTATTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGGTCGTGGACGTGGAAGGGGTGGAAGAGGCCGGGGACGTGTTCGTTATGAAGAACCATCCACCACCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCGGCTTCCTCGCCTAAGAGCTGGGCCGACAAAGCAGATGAAGAAACCAACGCAACGCCGAGCTCCGAGACAGCAACCTCATCGCTCAACGTCGACGGATTAACGATCTACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTGGTTTCGTCGTAACCTTGCCTATGATCTTGAATCCTCCTAATAGGGATTTGATCGCACAGGCGCATAACGATTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAATTAATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGAAGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAATTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGAATTTTAAGAAACTTGGGGTGACAAGGTTAAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGATTCCCTGA 786 0.4835 YQPPIPVDQVKPLNEYEEEGGRGRGRGGRGRGRVRYEEPSTTETTSASDAHPPAPASSPKSWADKADEETNATPSSETATSSLNVDGLTIYENKKPSPKFLDEPEDSNIQAVGFVVTLPMILNPPNRDLIAQAHNDSGKTTCFLLGMLSRINPKLQAPQAFCICPTRELAIQNTEVLRKKGKYTGISSECAIPADSRDALPIAKRAPIMAQLVIGTPGTINKWMNFKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMIP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4858g00011 261 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 84 259 - -
Gabi4858g00011 261 Gene3D - 64 260 IPR027417 -
Gabi4858g00011 261 MobiDBLite consensus disorder prediction 1 84 - -
Gabi4858g00011 261 SMART ultradead3 102 261 IPR014001 -
Gabi4858g00011 261 Pfam DEAD/DEAH box helicase 118 259 IPR011545 GO:0003676|GO:0005524
Gabi4858g00011 261 MobiDBLite consensus disorder prediction 12 38 - -
Gabi4858g00011 261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 261 IPR014001 -
Gabi4858g00011 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4858g00011 Gabi-Chr4858 120047 126609 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4858g00011 128 253 Eukaryotic Initiation Factors Gene Family AT1G72730 35.433 3.44e-17 78.6