Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4858g00008 ATGGCAGAACCATCCACCACCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCGGCTTCCTCGCCTAAGAGCTGGGCCGACGAAGCAGATGAAGAAACCAACGCAACGCCGAGCTCCGAGACAGCAACCTCGTCGCTCAACGTCGACGGATTAACGATCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTTGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGCACAGGCGCATAACGCTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGACTTTTAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGACATTGTCAAGAATTTTGTTTCGAGGACAGTTAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTATCCTGATGAACTCTCTAAGATTGAAATGAAAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTGGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGGCTTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAACGGTTAGGGTGGAGCCGACTGAGTCTGGTCAATCAGGTGGTAGTCTCTCGTTTGCCATGGAGAGTTTCTCGGACGCCCCTGGCGGTGATGACATGGTGGTGGTCGATACTCCGGACAGGGCGGGGGTACCTGTCATGGCGACTGTCGAAGGAACTTCAACGCCTGCGGCTGTTTCGTTAGTGCAGATCCTGAAGCTATCCGAGAGGGATCTGAACTCTAGTTTCCCTAATCCTGATTTAAACGTGTTGGTACCACAACAAATTAATCGCCAAGACATCATTGACTGCGCACAGGTAATGATCGGTCAGATTGTGGGAACCCGGGAGGCTACTCTTGCTGTTGACAGCCGTTGTTCTACCCAGCATGATGACTTGGTACAGAAAGGGCGCATGATTGAGTCCTTAACGGCCGAGTTCGGGCGGTTGAGCTTAAGAAAACATAGAGGTTAG 1773 0.4794 MAEPSTTETTSASDAHPPAPASSPKSWADEADEETNATPSSETATSSLNVDGLTIDENKKPSPKFLDEPEDSNIQAVSSFEELNLSPELLKGLYVEMKFQKPCKIQAVTLPMILNPPNRDLIAQAHNASGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDALPIAKRAPIMAQVVIGTPGTINKWMTFKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKGIEKFNSNCQVLLFSATFNDIVKNFVSRTVKQDYNTLFVKELSLDAVKQYKVHYPDELSKIEMKKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVVAPVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTGGPVIKDVQENAQSLAVNPSAPEVIPPKPTASGRKRVASEDLSSPKGAKTVRVEPTESGQSGGSLSFAMESFSDAPGGDDMVVVDTPDRAGVPVMATVEGTSTPAAVSLVQILKLSERDLNSSFPNPDLNVLVPQQINRQDIIDCAQVMIGQIVGTREATLAVDSRCSTQHDDLVQKGRMIESLTAEFGRLSLRKHRG 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4858g00008 590 Gene3D - 57 292 IPR027417 -
Gabi4858g00008 590 MobiDBLite consensus disorder prediction 1 17 - -
Gabi4858g00008 590 MobiDBLite consensus disorder prediction 407 458 - -
Gabi4858g00008 590 MobiDBLite consensus disorder prediction 1 70 - -
Gabi4858g00008 590 MobiDBLite consensus disorder prediction 33 53 - -
Gabi4858g00008 590 PANTHER RNA HELICASE 43 349 - -
Gabi4858g00008 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 283 IPR027417 -
Gabi4858g00008 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
Gabi4858g00008 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Gabi4858g00008 590 SMART ultradead3 98 302 IPR014001 -
Gabi4858g00008 590 Pfam DEAD/DEAH box helicase 104 276 IPR011545 GO:0003676|GO:0005524
Gabi4858g00008 590 CDD DEADc_DDX19_DDX25 85 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4858g00008 Gabi-Chr4858 97510 101948 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4858g00008 75 426 Eukaryotic Initiation Factors Gene Family AT1G72730 31.522 1.02e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4858g00008 K18655 - gmx:100778091 491.5