Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4857g00002 ATGCCAATGGCATCTTCTTCAGACTCATGGATAAAGGAATATAATGAAGCAGTGAAACTCACTGATGATATCAGTGGCATGATTTCTGAGCGGAGCTCATTGCCAGCATCTGGACCAGAAACCCAGCGTCATACAGCTGCTATAAGAAGAAAGATCACAATATTAGGGACCAGACTTGATAGCTTGCAATCCACTTCGTCAAGACTCCCTGCGAAGACTGAGAAGGAGATGAATCGTCGAAAGGACATGGTTGCAAATTTGAGGTCGAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAATTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATACAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTCGGTCTTCAACGGCAAATTATGAAAGAGCAAGACCAGGGCCTTGAGAAATTGGAGGACACCGTAATAAGTACGAAACATATTGCATTGGCAGTGAATGAAGAGCTGGATCTACACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTGCAGAAGAACTTGGCAGTTTTAAACAAGCGAACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTGGTTGGTATAGTGATTTTGGTGGTTGTCATATGGCTGTTGGTCAAATATTTGTAA 696 0.4325 MPMASSSDSWIKEYNEAVKLTDDISGMISERSSLPASGPETQRHTAAIRRKITILGTRLDSLQSTSSRLPAKTEKEMNRRKDMVANLRSKVNQMASTLNMSNFANRDSLLGPEIQPDAMSRTVGLDNNGLVGLQRQIMKEQDQGLEKLEDTVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVVGIVILVVVIWLLVKYL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4857g00002 231 CDD SNARE_Qc 138 195 - -
Gabi4857g00002 231 SMART tSNARE_6 130 197 IPR000727 -
Gabi4857g00002 231 Gene3D - 137 199 - -
Gabi4857g00002 231 SUPERFAMILY SNARE fusion complex 126 196 - -
Gabi4857g00002 231 FunFam syntaxin-51 isoform X2 137 199 - -
Gabi4857g00002 231 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 135 197 IPR000727 -
Gabi4857g00002 231 PANTHER SYNTAXIN 41 219 IPR045242 -
Gabi4857g00002 231 Pfam SNARE domain 172 223 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4857g00002 Gabi-Chr4857 26721 30214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4857g00002 3 231 SNARE and Associated Proteins AT1G16240 71.552 1.10e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4857g00002 K08503 - gmx:100794038 372.859