Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4855g00003 ATGGTTTGCAACAACGTCTACGTGTATCTCGTCGTCGTTGTCTTCTCGGCAACTTTGATTTCTCAGGGTTTGGCATTTACTGATCCAACTGACGTCACAGCTCTACAGGATCTATACAGGGCCTTAAACTACCCAACAGCGCTGCAAGGATGGAACGGTGGTGACCCTTGTGAGGAGTCTTGGACAGGTGTAGCATGTTCTGGATCATCAGTTATACACCTCAAAATTCAAGGATTAAACCTCACCGGGTATCTTGGAGGCTCGCTCTATAATCTGCAGAACTTGAAGCAACTTGATGTCAGTTCTAACAACATCGTGGGTGAAATACCAAACGGTTTACCCCCCAATGCCACACATATGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGCAATGTGTTTACCGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAACTTCACCGGAGATCTGCCAAGTTCATTTGGTTCCTTGACAAACCTTGATAGATTGTTCCTGCAGAATAACAAATTCACTGGATCAGTCACCTACCTGGCTGAGCTCCCCCTCATTGATTTGAACATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACTGCAATTTCAGACTATACCAAACTTATGGATTGGAGGGAATAAGTTCCATCCAGTGGACAACTCTCCTCCCTGGGCATTTCCTTTAGACGGTGTACCAGGTGAGCAAAATACTAGTCGCCCACCCACAACTCAGGCAAATGCCATCGAAAACTATGCTCCTCCTAAAGTAAGAAAGCACAAGAAGAAAGGCATGGGTCCTGGAGGAATAGCTTTTGTGGTTGGTGGAGTTACATTAATTGTAACGGGAATGGCGCTCTTCATTGCAATCCGTTTGAATAGATACCATACACAGGGGCTAAAGAGCTTGGAAAGCAACCATAGTTCAATGCCTTCTCATCCAATCAGTGCAGCCAAAGAGGTCTCTTCTACGGCCCTGGATAAGAGCCTCCAAATCCCACCTTTTAATGCTGCATCCCTTTTGGGCCCAAGGCGATTACATTCCCAGAACCATAAAGGGACGGGGGAAACGTCAAGAAGAAGTTTTTCAGAAAGAGACAGACTTACTGGAAGGACGAAGGTTTATACAGTAGCGGAGATTCAATTGGTTACAAACAGCTTCAATGAAGACAACCTTCTGGGGGAGGGATCTCTTGGCCCCGTTTACAGGGGTGAATTTCCAGATAACAAGATTTTGGCTGTGAAGAATATCAACATGGCGGGCTTGTCTTACAGTGAAGAGGAGAAGTTCTTAGATGTAGTTTGTACCGCCTCCCGTCTGAAGCACCCGAACATCGTTGCACTTAAAGGTTACTGTTTGGAGCACGGGCAACGTCTTCTTGTGTACGATTTTGTCAGAAATTTGACTCTAGACGAAGCTCTTCACAGTGAGGCTTACAAACCTTTATCGTGGGCCCTCCGACTCAGGATTGCTCTCGGTGTTGCTCAGGCTCTCGACTATCTGCACTCGACGTTCTCTGCTCCTGTTGCCCACGGCAACTTGAAGGCTGCCAATATTCTACTGGATGAGAATCTGATCCCTCGTGTTTGTGACTGTGGCTTGGCTGTTTTGAGACCATTGACGAGCAATAAAGTCAAAACTCGGGCTTCTGAGATTGAAATTAGAGATACAGGCTACTGTTCACCGGAACATGGCCAACCAGGAATTGGCAGCACAAAGAGTGACGTCTTTGCCTTTGGGGTGCTGCTTCTGGAATTGTTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCAAAGGGAAGAGCAATATCTAGCAAAATGGGCTTCGTCCAGGCTTCATGATGGCGAGAGTCTGGAAAAGATGGTGGATCCGGCAATTAAAAGGACATTCTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTTTGCATACAGCCCGTAAAGGAATTCCGTCCTCAAATGTCTGAAATCGTGGACTCTCTTGTGTCTTTTTCGCAAAAGATCAACTTGAGAGGTCTTTCCGATAGTGCAGCAGATGGTACTGATCTTGATCCCCTTGAGAGGTCTTTCCGTACAACCACCTCACGCTTTATGGTTTCTCCCACATTGAGCTATGTATCAGCTTGA 2139 0.4572 MVCNNVYVYLVVVVFSATLISQGLAFTDPTDVTALQDLYRALNYPTALQGWNGGDPCEESWTGVACSGSSVIHLKIQGLNLTGYLGGSLYNLQNLKQLDVSSNNIVGEIPNGLPPNATHMNLSHNFLYGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLTNLDRLFLQNNKFTGSVTYLAELPLIDLNIQENLFSGILPLQFQTIPNLWIGGNKFHPVDNSPPWAFPLDGVPGEQNTSRPPTTQANAIENYAPPKVRKHKKKGMGPGGIAFVVGGVTLIVTGMALFIAIRLNRYHTQGLKSLESNHSSMPSHPISAAKEVSSTALDKSLQIPPFNAASLLGPRRLHSQNHKGTGETSRRSFSERDRLTGRTKVYTVAEIQLVTNSFNEDNLLGEGSLGPVYRGEFPDNKILAVKNINMAGLSYSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQRLLVYDFVRNLTLDEALHSEAYKPLSWALRLRIALGVAQALDYLHSTFSAPVAHGNLKAANILLDENLIPRVCDCGLAVLRPLTSNKVKTRASEIEIRDTGYCSPEHGQPGIGSTKSDVFAFGVLLLELLTGRKPFDGSRQREEQYLAKWASSRLHDGESLEKMVDPAIKRTFSSKALSRYADIISLCIQPVKEFRPQMSEIVDSLVSFSQKINLRGLSDSAADGTDLDPLERSFRTTTSRFMVSPTLSYVSA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4855g00003 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 117 229 - -
Gabi4855g00003 712 MobiDBLite consensus disorder prediction 351 367 - -
Gabi4855g00003 712 Gene3D Transferase(Phosphotransferase) domain 1 468 681 - -
Gabi4855g00003 712 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 354 466 - -
Gabi4855g00003 712 Gene3D Phosphorylase Kinase; domain 1 350 466 - -
Gabi4855g00003 712 Pfam Protein tyrosine and serine/threonine kinase 392 665 IPR001245 GO:0004672|GO:0006468
Gabi4855g00003 712 SUPERFAMILY Protein kinase-like (PK-like) 365 665 IPR011009 -
Gabi4855g00003 712 SUPERFAMILY L domain-like 27 212 - -
Gabi4855g00003 712 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Gabi4855g00003 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 668 IPR046959 -
Gabi4855g00003 712 FunFam Leucine-rich repeat receptor-like protein kinase 467 675 - -
Gabi4855g00003 712 ProSiteProfiles Protein kinase domain profile. 389 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4855g00003 712 Gene3D Ribonuclease Inhibitor 28 228 IPR032675 -
Gabi4855g00003 712 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Gabi4855g00003 712 MobiDBLite consensus disorder prediction 343 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4855g00003 Gabi-Chr4855 76698 82299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4855g00003 9 712 Strubbelig Receptor Gene Family AT5G06820 53.752 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi4855g00003 PK_Tyr_Ser-Thr 8.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4855g00003 - - gmx:100793182 1152.89