Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4852g00001 CCCAAGCAGAAACGTAGTGGTGTAGTGGGAGATATAAGCAGTGACCCATTGACCCACAAGAGGTGGACTCCAACGCTCAAGCAGCTTCAGATTCTTGGGCGAATATTTGAGGAGGGGAAGGGGAAGGGAACTACAAACAAGGAAAAAATCAAGGAGATAACCGCTGAACTGAGCCAGTATGGCCAAATATCCGAAAGAAATGTTTATAATTGGTTTCAGAACAAGCGAGCTCGACGGAAAAGAAAACGGCATAATGTGACAGAGGGTAAGGGTAACACTGAATCAGAAATAAACAATGAGGAATATCAGTCCCAACCAAGGGATAAAAAATTGTGCTTACAGAACCCTGAAGACTTGCAGTACTTGGATTCAGATTCTTACATACCATATGCTTCCATGTTCTGGTCAGATGATTTGTATACAGTGTCTGTTTTTGATGATGTGCCATCAAACACAAGTATGTAA 465 0.4215 PKQKRSGVVGDISSDPLTHKRWTPTLKQLQILGRIFEEGKGKGTTNKEKIKEITAELSQYGQISERNVYNWFQNKRARRKRKRHNVTEGKGNTESEINNEEYQSQPRDKKLCLQNPEDLQYLDSDSYIPYASMFWSDDLYTVSVFDDVPSNTSM 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4852g00001 154 MobiDBLite consensus disorder prediction 78 107 - -
Gabi4852g00001 154 ProSiteProfiles 'Homeobox' domain profile. 15 82 IPR001356 GO:0003677
Gabi4852g00001 154 Gene3D - 21 87 - -
Gabi4852g00001 154 PANTHER WUSCHEL-RELATED HOMEOBOX 13 14 107 IPR044559 GO:0003700
Gabi4852g00001 154 CDD homeodomain 20 74 IPR001356 GO:0003677
Gabi4852g00001 154 Pfam Homeodomain 20 81 IPR001356 GO:0003677
Gabi4852g00001 154 SMART HOX_1 17 86 IPR001356 GO:0003677
Gabi4852g00001 154 SUPERFAMILY Homeodomain-like 17 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4852g00001 Gabi-Chr4852 11954 12420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4852g00001 6 123 Wox Gene Family AT4G35550 39.877 8.13e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi4852g00001 Homeodomain 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4852g00001 - - pvu:PHAVU_007G011600g 113.62