Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00009 ATGCCTCTTTTGAGGAGAAAGCCTTTTGCCTTGGCTGAGCCACCTAAGGATTTGGAGCCAACTGAGACTGTTTATCAAATTCGGTTTACGAAAGAAATATTTCGAGATTATCATGAATATTTGAACCGGATAAATCTATACCGCCAGAGGGTTTGGATGTGCAAAGTCACTGGAAAAACTTGCTTGACTTATGAAGGCGCTCTGGTGTCAGAAAAATATGCAACTGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGGCACCTGCTCTAAGGATTATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAGAATTGCAGGAGCGGTTGTTTGTGGGTGCTGAAGTTTATGGGAAAAAGGATAATGGAGCACATCCATGCAAAATATTGAAAGTCTTGCAGGAAGGTGGTAACAAAGTCCGTTACGAGGTAGCTTGGCTTGACAAAAACAATAATATAATTGAAAGAACAGAAGTCAGCTCTGAAGATTTGGTACAGAAGAAGCTGCCTTTTAGTAGAAATATGTTGAAGTCTTTTATCCGTGAATCTACATATCGCAATGCTCCTTGGGTTTTACATGATAAAGTGGCAAAAAATCATGGAATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAGGATTTTCTTCAACAATGGACTTTTAGTCTGCAGCAAGAAAAGAAAAAATGAGGAATCAAAGGGAGGTACTGAAAACTGTAAAAGGAACAAGTTAGGTGGGGCAAAATTTGATAGTTCTGCCCAAGAGAAAGAAAATGACCATAACAAGGAGGAACCAATCAAATATCCAATTGATGATCTATTGGTGAAGCCTGATCCAGATGATCCGGTTTTCACTAATCGCCCTTCTCCATCAAGAGACTTCAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTCATGTCTTTTGGTAAACTGTTACGATTGTGGCCTTACTCTCTTGAAGATTTTGAAAATGCAATCTGCCACAAGGGTAGCAATGTTGTTCTCCTTGTGGAATCACATGCCGTACTCTTTCGGGTGCTCCTGAAATGTGATGATGAATACTCTTCAACTGTAGAGAAAAGAAAGCGGAAGTCTAAGATTACAATGATTAATTGGACAGACTATGTACGTGATTTTCTAGATATGATCAATATTCCTGGCCTACGACACTATGAAGCAACCATAAAACGGGGACATTATGGTTTTCTAGATGTCAATGCTAAATTAGAAATCTTTTGTGAATTGGTCAATCGAGTCCTTGAAACTGCTATTCTCAGGGAAAAGTTGGATGAGTTTGTTGAACAGCGGCGGACACTTGGGGCCTCTAGAAGGGAAGAAGCACTGGAAGCTTCTAGGAAGAGAAAAAAAGAAAAGGAGCAGTTGAAAGCTGATTCTGAAAGCAATGGAGGTGTAGGTGGACATCATCTAAGTATCTCAACAAATAATAATCACAGATTACAGAATGGTGACATAGGAAAGAATAGAAACGGAGAGATAGAATCATCAAGCCAAAAAGATGCTTTGGATAGAAGCAGTGTGATCAACCATTCAAACCCTGCTTCAAAAATGACACCTAAGAAGTTTAATCCAGAGCTGAAAGGACCAGCAGAAATTGGAAATAAGGATCCATCAGAGAAGAAAAGTAAAGAAAAGAAGAGAGATTATTTTGAACGGGAGATGGAGAAACGATTTATTCGCACAAGCCCCTTAGGGAAGGACAGATATCATAATAGGTATTGGTGGTTCCACCGCGATGGGAGGATATTTGTTGAAAGTTCTGATTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAATTGCAAGGGTGAGAGGGAAAGGGCACTGCAAAAACAACTGGAAATTTTTTATAGTAGAATATGCTCAGAATTCCAGAAAAGATCAAAGGATTTGATACATAAGATGGCACTGGATGACTCTGTGGTCCGGAGGTCTACTCGTGTTCGGGCTCCTCCTAGGGAAAATCCTGCCAGTGCTTTCCTCAGATATATTAATAAGTGGAAAGAAGAGTAG 2091 0.3984 MPLLRRKPFALAEPPKDLEPTETVYQIRFTKEIFRDYHEYLNRINLYRQRVWMCKVTGKTCLTYEGALVSEKYATEKVQQFPKELMAPALRIIQYSMLPLKDLADSIAEELQERLFVGAEVYGKKDNGAHPCKILKVLQEGGNKVRYEVAWLDKNNNIIERTEVSSEDLVQKKLPFSRNMLKSFIRESTYRNAPWVLHDKVAKNHGISTDIPEELRGRIFFNNGLLVCSKKRKNEESKGGTENCKRNKLGGAKFDSSAQEKENDHNKEEPIKYPIDDLLVKPDPDDPVFTNRPSPSRDFNVPIYCVGDLLMVWDFFMSFGKLLRLWPYSLEDFENAICHKGSNVVLLVESHAVLFRVLLKCDDEYSSTVEKRKRKSKITMINWTDYVRDFLDMINIPGLRHYEATIKRGHYGFLDVNAKLEIFCELVNRVLETAILREKLDEFVEQRRTLGASRREEALEASRKRKKEKEQLKADSESNGGVGGHHLSISTNNNHRLQNGDIGKNRNGEIESSSQKDALDRSSVINHSNPASKMTPKKFNPELKGPAEIGNKDPSEKKSKEKKRDYFEREMEKRFIRTSPLGKDRYHNRYWWFHRDGRIFVESSDSKEWGYYSSKEELDALMGSLNCKGERERALQKQLEIFYSRICSEFQKRSKDLIHKMALDDSVVRRSTRVRAPPRENPASAFLRYINKWKEE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00009 696 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Gabi484g00009 696 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 694 - -
Gabi484g00009 696 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Gabi484g00009 696 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 23 121 IPR013136 -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 235 267 - -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 483 509 - -
Gabi484g00009 696 Pfam DDT domain 305 359 IPR018501 -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 549 564 - -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 517 535 - -
Gabi484g00009 696 Coils Coil 455 479 - -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 451 475 - -
Gabi484g00009 696 SMART testlast3 303 364 IPR018501 -
Gabi484g00009 696 MobiDBLite consensus disorder prediction 451 564 - -
Gabi484g00009 696 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 576 640 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00009 Gabi-Chr484 135599 142345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00009 367 640 Homeobox Transcription Factor Family AT1G28420 26.689 1.39e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi484g00009 WAC_Acf1_DNA_bd 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00009 - - gmx:100789956 962.985