Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00006 ATGGACAAGTACGAGGTTGTCAAGGATCTGGGTACTGGCAATTTTGGGGTGGCAAGGCTTATGAGGAACAAGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCCAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCTCTTCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAGCTTTTCGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGCCAGATATTTCTTTCAGCAGCTGATCTCCGGTGTCCATTTCTGTCATACCAAGCAAATATGCCACAGAGATTTGAAGCTAGAAAACACCCTTTTAGATGGAAGTCCTGCACCACGCTTAAAAATTTGTGACTTTGGTTATTCCAAGTCTTCTTTGCTGCATTCACAACCCAAATCAACGGTTGGAACACCGGCTTACATAGCACCAGAGGTTCTTTCTAGGCGAGAATATGATGGAAAGTTGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACACTAGGAATTTTAGGAAAACAATTCAGCGTATCATGTCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGAAACCTCCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAAAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGTTAACTGAATCAGCTCAAGCTATCTATTATCAGAGAGACAATCCAAGCTTTCATGTTCAGAGTGTGGAGGACGTAATGAAAATTGTGGGAGAGGCAAGAAACCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATGAAGAGGCAGAAGATTTGGATGCAGAAGTGGAGGATGAAGAAGATGAGTATGATCAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCAAATTAGTTAA 1059 0.4315 MDKYEVVKDLGTGNFGVARLMRNKVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHTKQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDTRNFRKTIQRIMSVQYKIPDYVHISQDCRNLLSRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDNPSFHVQSVEDVMKIVGEARNPPPVSRPVKGFGWEGEEDEEAEDLDAEVEDEEDEYDQRVKEVHASGEFQIS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00006 352 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00006 352 MobiDBLite consensus disorder prediction 304 352 - -
Gabi484g00006 352 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Gabi484g00006 352 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
Gabi484g00006 352 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Gabi484g00006 352 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00006 352 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00006 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gabi484g00006 352 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Gabi484g00006 352 CDD STKc_SnRK2 3 259 - -
Gabi484g00006 352 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi484g00006 352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gabi484g00006 352 Coils Coil 315 342 - -
Gabi484g00006 352 MobiDBLite consensus disorder prediction 316 336 - -
Gabi484g00006 352 PANTHER SERINE/THREONINE KINASE 3 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00006 Gabi-Chr484 113146 116334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00006 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.123 5.12e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gabi484g00006 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00006 K14498 - gmx:547811 647.121