Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00005 ATGGACAAGTACGAGGTTGTCAAGGATCTGGGTACTGGCAATTTTGGGGTGGCAAGGCTTATGAGGAACAAGGTCACCAAGGAGCTCGTAGCCATGAAATACATCGAGCGTGGCCCCAAGATTGATGAGAACGTGGCAAGGGAGATTATGAACCACAGGTCTCTTCGGCATCCCAATATAATTCGTTACAAGGAGGTGGTTTTGACTCCCACACATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGAGAGCTTTTCGAGAGGATATGCAGTGCTGGCAGGTTCAGTGAAGATGAGGTTAATAGCGCCAGATATTTCTTTCAGCAGCTGATCTCCGGTGTCCATTTCTGTCATACCAAGCAAATATGCCACAGAGATTTGAAGCTAGAAAACACCCTTTTAGATGGAAGTCCTGCACCACGCTTAAAAATTTGTGACTTTGGTTATTCCAAGTCTTCTTTGCTGCATTCACAACCCAAATCAACGGTTGGAACACCGGCTTACATAGCACCAGAGGTTCTTTCTAGGCGAGAATATGATGGAAAGTTGGCTGATGTATGGTCATGTGGGGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGACCAGGATGACACTAGGAATTTTAGGAAAACAATTCAGCGTATCATGTCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGAAACCTCCTCTCTCGTATATTTGTTGCAAATCCATTGAGGAGAATTACTATTAAGGAAATTAAAAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGTTAACTGAATCAGCTCAAGCTATCTATTATCAGAGAGACAATCCAAGCTTTCATGTTCAGAGTGTGGAGGACGTAATGAAAATTGTGGGAGAGGCAAGAAACCCACCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGTTGGGAAGGTGAAGAAGATGAAGAGGCAGAAGATTTGGATGCAGAAGTGGAGGATGAAGAAGATGAGTATGATCAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCAAATTAGTTAA 1068 0.4307 MDKYEVVKDLGTGNFGVARLMRNKVTKELVAMKYIERGPKIDENVAREIMNHRSLRHPNIIRYKEVVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEVNSARYFFQQLISGVHFCHTKQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDTRNFRKTIQRIMSVQYKIPDYVHISQDCRNLLSRIFVANPLRRITIKEIKNHPWFLKNLPRELTESAQAIYYQRDNPSFHVQSVEDVMKIVGEARNPPPVSRPVKGFGWEGEEDEEAEDLDAEVEDEEDEYDQRVKEVHASGEFQIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00005 355 SMART serkin_6 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00005 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gabi484g00005 355 MobiDBLite consensus disorder prediction 307 355 - -
Gabi484g00005 355 SUPERFAMILY Protein kinase-like (PK-like) 2 298 IPR011009 -
Gabi484g00005 355 Coils Coil 318 345 - -
Gabi484g00005 355 Pfam Protein kinase domain 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00005 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Gabi484g00005 355 Gene3D Transferase(Phosphotransferase) domain 1 80 271 - -
Gabi484g00005 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Gabi484g00005 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi484g00005 355 FunFam Serine/threonine-protein kinase SRK2A 80 271 - -
Gabi484g00005 355 ProSiteProfiles Protein kinase domain profile. 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi484g00005 355 PANTHER SERINE/THREONINE KINASE 3 298 - -
Gabi484g00005 355 MobiDBLite consensus disorder prediction 319 339 - -
Gabi484g00005 355 CDD STKc_SnRK2 3 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00005 Gabi-Chr484 113146 116334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00005 3 267 CBL-interacting serine-threonine protein kinases AT5G10930 42.960 2.89e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gabi484g00005 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00005 K14498 - gmx:547811 641.728