Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00004 ATGGCGAGGAAATCACTTGGGTTCTTCTTCTTCTTTCTCCTCATTGTCTTTGCTGCTCAAGTGGTGGTGCAGACAGAGGCAAGGGTGTGTGAGTCACAGAGTCACAAGTTTAAGGGAGCATGTGCGGGTGACCACAACTGTGCTGAGGTTTGCAGGAACGAAGGTTTCTCTGGTGGCAGATGCAGAGGATTCCGCCACCGTTGCTTTTGCACCAGGATTTGTTGA 225 0.5067 MARKSLGFFFFFLLIVFAAQVVVQTEARVCESQSHKFKGACAGDHNCAEVCRNEGFSGGRCRGFRHRCFCTRIC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00004 74 SMART gth_4 29 74 IPR003614 GO:0006952
Gabi484g00004 74 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Gabi484g00004 74 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Gabi484g00004 74 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
Gabi484g00004 74 CDD Knot1 39 71 IPR003614 GO:0006952
Gabi484g00004 74 Gene3D - 28 74 IPR036574 -
Gabi484g00004 74 PANTHER DEFENSIN-LIKE PROTEIN 1 4 71 - -
Gabi484g00004 74 Pfam Gamma-thionin family 28 74 - -
Gabi484g00004 74 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00004 Gabi-Chr484 99859 100203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00004 10 74 Plant Defensins Gene Families AT5G63660 60.000 4.18e-26 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00004 - - qsu:112007065 107.071