Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00002 ATGGACAAGGCACGATTTGGGCTTTTCTTCATGTTGCTTATTCTCCTTGCATCTCAGATGGTGGTACAAACCGAGGGAAGGCGACACTGTCAGTCACAGAGCCATCGTTTCAAAGGGTTGTGCTTCAGCCATCACAATTGTGCCTCGGTTTGCACTGTTGAAGGTTTCACTGGTGGAAAGTGCAGGGGATTCCGTAAACGCTGTTTCTGCACCAAGCATTGTTAA 225 0.48 MDKARFGLFFMLLILLASQMVVQTEGRRHCQSQSHRFKGLCFSHHNCASVCTVEGFTGGKCRGFRKRCFCTKHC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00002 74 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Gabi484g00002 74 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Gabi484g00002 74 SMART gth_4 29 74 IPR003614 GO:0006952
Gabi484g00002 74 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
Gabi484g00002 74 CDD Knot1 39 71 IPR003614 GO:0006952
Gabi484g00002 74 PANTHER DEFENSIN-LIKE PROTEIN 1 6 74 - -
Gabi484g00002 74 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
Gabi484g00002 74 Gene3D - 28 74 IPR036574 -
Gabi484g00002 74 Pfam Gamma-thionin family 28 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00002 Gabi-Chr484 91614 92140 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00002 1 74 Plant Defensins Gene Families AT5G63660 54.054 1.25e-23 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00002 - - gmx:100788332 139.813