Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi484g00001 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACAAAAGAAGAAGATGAGCGTCTCATTAACTACATCAAGATTCACGGTGAAGGCTGTTGGAGATCTCTTCCTAAAGCTGCTGGCTTGCTTAGATGTGGCAAGAGTTGTAGACTCAGATGGATTAATTACCTTAGACCTGATCTCAAAAGAGGAAACTTCACTGAACAAGAAGATGAGCTTATCATTAACCTTCACAGCTTACTTGGAAACAAATGGTCTTTAATAGCTGCAAGGTTACCAGGAAGAACTGATAATGAAATAAAAAACTATTGGAACACTCACATCAAACGAAAACTCTATAGCCGTGGAATCGACCCACAAACTCATCGTCCACTCAACAGTTCATCCACTTCGACGGCCACCGCCACCGCCACCGCCACCGCCACCGCAACTGCCACCACAGTTCCACCTGCTAACTCTACTACTACAGTCCCTGTGGTCACAACAAGCACTAAGAAAACGAACAACCATAACATTAACAACAACAACAACATCAGTTTTCAGTTAGTGAGTGGTTATGCCAACACAAACATTGGAACCGATTTAAATGGTGAAGATTCGAATAGCAGCAGCGGCGTTACCACAGAGGAAGCTTATCCTCATGATCAAGTGAATTTGGACCTTTCCATTGGGCTTCCATCTCAGCCTCATGCTTCTTCCGTGAACACAGACAAGTTAAAACAAGAACAACAAGAACCACCACCACCAAATGTTTTGTACCAATGGTATGGGAATGTTACTAGTCAAGGTGTGTGCCTGTGTTACGGTCTAGGGTTTCAAACCAAGCAAGCATGTAGCTGCAAAGCCATGGGTACTACCACCACAACCACCACCGATAATAGTTTGTACAGATTTTATAGACCCATGAATATTTAG 927 0.4337 MGRSPCCEKEHTNKGAWTKEEDERLINYIKIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSSSTSTATATATATATATATTVPPANSTTTVPVVTTSTKKTNNHNINNNNNISFQLVSGYANTNIGTDLNGEDSNSSSGVTTEEAYPHDQVNLDLSIGLPSQPHASSVNTDKLKQEQQEPPPPNVLYQWYGNVTSQGVCLCYGLGFQTKQACSCKAMGTTTTTTTDNSLYRFYRPMNI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi484g00001 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi484g00001 308 CDD SANT 69 112 IPR001005 -
Gabi484g00001 308 MobiDBLite consensus disorder prediction 226 247 - -
Gabi484g00001 308 SMART sant 13 63 IPR001005 -
Gabi484g00001 308 SMART sant 66 114 IPR001005 -
Gabi484g00001 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi484g00001 308 CDD SANT 16 61 IPR001005 -
Gabi484g00001 308 MobiDBLite consensus disorder prediction 124 161 - -
Gabi484g00001 308 Gene3D - 68 142 - -
Gabi484g00001 308 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 225 - -
Gabi484g00001 308 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gabi484g00001 308 FunFam Myb transcription factor 68 137 - -
Gabi484g00001 308 Gene3D - 14 66 - -
Gabi484g00001 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi484g00001 308 MobiDBLite consensus disorder prediction 119 161 - -
Gabi484g00001 308 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi484g00001 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi484g00001 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi484g00001 308 FunFam MYB-related transcription factor 13 66 - -
Gabi484g00001 308 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi484g00001 Gabi-Chr484 46706 48148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi484g00001 1 230 MYB Transcription Factor Family AT4G38620 60.435 4.95e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi484g00001 Myb_DNA-binding 8.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi484g00001 K09422 - gmx:100808083 431.795