Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4848g00009 ATGGTGAAGTACTCAAGGGAGCCTGATAACCCTACAAAGTCTTGCAAAGCCCGGGGTTCAGATCTGAGGGTTCATTTTAAGAACACCAGGGAAACAGCTCATGCAATTAGGAAGTTGCCTTTGGGAAAGGCTAAAAGGTACCTTGAGGATGTTCTTGCTCACAAGCAAGCAATTCCCTTTCGACGGTTTTGTCGTGGAGTTGGTCGTACTGCTCAAGCAAAAAACCGCCATTCAAATGGTCAAGGACGATGGCCTGTCAAATCAGCTAAGTTTATCCTTGATTTGCTGAAAAATGCAGAGAGCAATGCAGAAGTTAAAGGTCTTGATGTGGATGCACTATATGTTTCCCACGTCCAGGTGAATCAAGCTCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGAAGAATTAATCCATACATGTCATCACCCTGCCACATTGAGTTGATTTTGTCTGAAAAGGAGGAGCCAGTTAAAAAGGAGCCTGAGACACAGTTGGCTGCAAGGAAATCCAAGAGCTCATAG 525 0.4571 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLGKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAARKSKSS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4848g00009 174 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Gabi4848g00009 174 PANTHER 60S RIBOSOMAL PROTEIN L17 1 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi4848g00009 174 Gene3D Ribosomal protein L22/L17 1 174 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gabi4848g00009 174 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi4848g00009 174 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gabi4848g00009 174 FunFam 60S ribosomal protein L17 1 174 - -
Gabi4848g00009 174 MobiDBLite consensus disorder prediction 153 167 - -
Gabi4848g00009 174 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gabi4848g00009 174 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gabi4848g00009 174 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gabi4848g00009 174 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4848g00009 Gabi-Chr4848 104842 107103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4848g00009 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.080 1.91e-119 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4848g00009 K02880 - jre:109003161 335.109