Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4848g00005 ATGGAGGAAGTGAAGGAAAAGTGTTGGAGAATGGAGGTTGACGAGAACCTCAAGAGGCTCCACTCTCTTCTCTTCGGCGCGGAACACGCTCTCGATAACAATGACTTCTCCTCCGCTTACGTACTCACGCTTCGTCTCCTCGGATTCCTCGAATCGCGGCGCTGCTCCGACGTCGACGAAGCCTTCGTCCAACCGATTCGCCGCGAGGCCCTCGCCAAGCTCCATTCCGCTCGCCGATCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAGCAAGCAAAGAAGTCTCCAGGATGCGTTTTTGGCACCACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTTCGAGCTCTTTTCAAGCAATCTAAAGAAAAAGATGAAAATCAATTGGATGATCAACTGGGTAAGCAAGACAAAGCAGGAAGCAAAGCGTCGAAGGAAATTCTGCAAGCAAAGTTGACATCCATGTACGGGAAAAGCAGCTTGAAGACTAGTAATGGTTCCAAGAGTTTTTTCAACTTGAAAAGTAACATCTCCGAGGACTGCATGATTGTTGAAAGGGCTCAGTCACATGCCAGCCATACGAAGGGTCCTGGTGTCTCTTCTTTCTTACAAGTTGAAGGGGAAGAAAGAGCTTTTGGAAACTCTTTTTCTACAAAACGCTTACACATGGAAAATAATAGCCCCAAAGTTGGTTATGCAAAGTCACCTTCAAGTAAGGAGGAAGTTAATTCTGATGTTTGTGGCAACGGGTTCGTTACTGCCAGAGCAAAACTGGAAATGGAAGCAAAGCAAAAGCGAGGAGTAGTTGGTTCACCCAGTGCATCTGTCTCACCACAATGCGATTACAATCCTGGCAACAGGTTATATGGTGGGAGATCATATGGTGTTTCACGTCGTGGCTTTCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATGCTGGAAACATGAGTTCACGGATTGCTGGAAAGTCTGATGATGCCTTAGATGACTCTACAAAGAGATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGACAGAGATCCCAATGTCCGGTGGGATGACATTGCTGGACTTGATCATGCCAAGAAATGTGTCACTGAGATGGTCATATGGCCTCTACTACGTCCTGACATATTTAAGGGCTGCCGTTCCCCAGGAAGAGGTCTGCTTCTATTTGGTCCACCGGGAACTGGCAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCAGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCGCTCCTGTCTCAGCGAAAGTCAGAGGGTGAGCATGAATCAAGTAGGCGGCTAAAGACGCAGTTTCTAATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATCCTGCTTATAGGAGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGGAGGAGACTTACCAAAAGACTTTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTGTACGTAACCTTTTAGAAAAGGATGGATTATTCAAGCTATCAAATGAGGAAATAGATATCATATGCAACTTAACGGAAGGTTATTCGGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGTCCCCTCAGAGAGGCTTTAAGACAAGGCATAGAAATTACTAAGTTGAAAAAGGAGGATATGCGGTCAGTAACCCTTCAGGATTTTGAGGATGCCCTGCAAGAGGTGAGGCCTTCTGTTTCTTCAAATGAACTTGGCACTTATGATCAATGGAATAAGCAATTTGGAAGCCTATCACTGTAG 1980 0.452 MEEVKEKCWRMEVDENLKRLHSLLFGAEHALDNNDFSSAYVLTLRLLGFLESRRCSDVDEAFVQPIRREALAKLHSARRSLTPQSDRQAFEQAKKSPGCVFGTTGDIDIEKIRNSKYFRALFKQSKEKDENQLDDQLGKQDKAGSKASKEILQAKLTSMYGKSSLKTSNGSKSFFNLKSNISEDCMIVERAQSHASHTKGPGVSSFLQVEGEERAFGNSFSTKRLHMENNSPKVGYAKSPSSKEEVNSDVCGNGFVTARAKLEMEAKQKRGVVGSPSASVSPQCDYNPGNRLYGGRSYGVSRRGFRGNFVPPIKSNGNNAGNMSSRIAGKSDDALDDSTKRCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLDHAKKCVTEMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSEGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDGLFKLSNEEIDIICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRSVTLQDFEDALQEVRPSVSSNELGTYDQWNKQFGSLSL 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4848g00005 659 ProSitePatterns AAA-protein family signature. 520 539 IPR003960 GO:0005524|GO:0016887
Gabi4848g00005 659 PANTHER AAA DOMAIN-CONTAINING 169 656 - -
Gabi4848g00005 659 FunFam Fidgetin-like 1 377 559 - -
Gabi4848g00005 659 SMART AAA_5 414 550 IPR003593 GO:0016887
Gabi4848g00005 659 Gene3D - 377 651 IPR027417 -
Gabi4848g00005 659 Gene3D - 549 635 - -
Gabi4848g00005 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Gabi4848g00005 659 Pfam ATPase family associated with various cellular activities (AAA) 418 548 IPR003959 GO:0005524|GO:0016887
Gabi4848g00005 659 FunFam Fidgetin like 1 549 635 - -
Gabi4848g00005 659 Pfam Vps4 C terminal oligomerisation domain 621 655 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4848g00005 Gabi-Chr4848 77398 89124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4848g00005 355 657 Calmodulin-binding Proteins AT3G56690 32.468 2.51e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4848g00005 K22766 - gmx:100776024 1133.24