Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4843g00002 ATGAAGAAAGTTTGGCTTCTTGTTCTTGTGATGTTGTTCTATGGCTTTCCTTCAAAAGGAATCAGCAATGTTTCTGCAAGACCAAGTACCGTTAACATTGGGGCAATTTTATCTTTCAATTCAACCATTGGCAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGAATGATATAAATTCCAATGCAACGGTTCTCAAAGGAACTAAACTTCATATTTCAATGCAGGACACAAAACTCTCCAATGGATTTCTAGGAATCATTGACTCATTACGATTGATGGAGAATGACACTGTGGCTGTAATTGGTCCTCAGTTCTCAGTCATGGCTCATGTGATTTCACATATTGCAAATGAGATGCAAGTACCTCTACTGTCATTTGCTGCATCAGACCCTACCCTCACTTCATTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATTTGTATCAAATGGCTGCTGTGGCAGAAATTGTTGACCGCTTTCAATGGAGAGATGTAATAGCAATTTTCATTGATGATGATCATGGACGAAATGGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACATAAAGCGTCCTTTAGGCCTGATAATGTTAACCATGATGAAATAGACAGTGTATTAGTTAAGGTAGCATTAATGGAATCTAGGGTAATAGTCCTTCACATGTACCCTGCTCTTGGTCTAGAAGTACTTCATGTGGCTGAGTCACTAGGCATGATGGGAAGTGGTTATGTATGGATAGCAACAGATTGGCTTTCTACAATACTAGATTCAGAACCATCCTTGTCCACAAGTTCAGCCATGGATGACATCCAAGGTGTTGTCACCTTGCGCAAGTATACACCAGATTCACAAATCAAAACAAACTTTATTTCTAGGTGGAACAACCTGACCCATAAAAGGGACCCTGATCAGGGCCCTATTGGGTTGAACACCTTTGGTCTATATGCCTATGACACTGTTTGGGTTCTTGCTTCTGCACTTGATGCATTTTTTAACAATGGAGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGAGGGGATCCCCTTCATCTGGATTCTATGGGGGTCTTTGTTAATGGTAGCATGTTGCTTCAAGAAATTTTAAAGGTCAACAGAACTGGTTTGACAGGCCAAATGGTGTTCGGTCAAGATGGTAACTTATTGCATCCATCATTTGAAATCATTAATGTGATAGGTACTGGAATTAGGAGAATTGGTTATTGGTCTGATTCCTCTGGCCTCCACACTGGAGAAGCTCCTAATCATTCCAATTCTAGTGAAGGACTATATGGTGTCATATGGCCTGGTCAGACAACTCAAACCCCTCGTGGTTGGGTTTTTGCCAGCAATGGAAGACACTTGAGAATTGGGGTGCCACTTAGAATTAGTTACCATGAATTAGTGTCAAGAATTGAGGGTACTGAAATGTTTAGTGGTTATTGCATTGATGTGTTTACTGCTGCATTGGACTTGTTGCCTTATCCAGTTCCATACAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCATTAAACACAGAACTTCTCCACAAGATTACAGTTAGTGACTTCGATGCTGTGGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTGGTAGTGGTGGCACCTATTAGGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAAGACCATTTACTCCAATGATGTGGTTTGTCACAGGAATGTTTTTCCTAGTTGTGGGATCTGTTGTGTGGATTTTAGAACGTCGCTTAAACGATGAGTTTAGAGGCCCACCTAGAAGGCAGTTTGTGACAATTATATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAAGGAGAAAACTATGAGCACTCTTGGTCGCTTAGTACTTATCATATGGCTTTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCTTAACATCCATCCTCACAGTGGAACAACTCTCTTCCCCAGTGAAGGGAATTGAAAGCTTAGCAACAAGCAACGACCGCATTGGTTACCTAAGAGGTTCATTTGCAGAAAATTATCTGACTGAGGAGCTCAACATAATCAGATCAAGGCTTGTTCCTCTCAACTCTCCATCAGAATATGAAAAGGCCTTGAAGGATGGGCCAGCTAACGGTGGTGTTGCAGCAATAATAGATGAACGTGCATACATGGAACTCTTCCTAGCAACCAGATGTGAATTCGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGCTTTGTAACAGTAACCTTGAAGGCTCATCACACTCTGCTCGTCTAA 2364 0.4116 MKKVWLLVLVMLFYGFPSKGISNVSARPSTVNIGAILSFNSTIGRVAKVAIEAAVNDINSNATVLKGTKLHISMQDTKLSNGFLGIIDSLRLMENDTVAVIGPQFSVMAHVISHIANEMQVPLLSFAASDPTLTSLQFPYFVRTTQSDLYQMAAVAEIVDRFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRGKISHKASFRPDNVNHDEIDSVLVKVALMESRVIVLHMYPALGLEVLHVAESLGMMGSGYVWIATDWLSTILDSEPSLSTSSAMDDIQGVVTLRKYTPDSQIKTNFISRWNNLTHKRDPDQGPIGLNTFGLYAYDTVWVLASALDAFFNNGGTLSFSNDSSLNMLRGDPLHLDSMGVFVNGSMLLQEILKVNRTGLTGQMVFGQDGNLLHPSFEIINVIGTGIRRIGYWSDSSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYHELVSRIEGTEMFSGYCIDVFTAALDLLPYPVPYKFIPFGDGKTNPLNTELLHKITVSDFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKLKSSAWAFLRPFTPMMWFVTGMFFLVVGSVVWILERRLNDEFRGPPRRQFVTIIWFSFSTLFFAHKEKTMSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLATSNDRIGYLRGSFAENYLTEELNIIRSRLVPLNSPSEYEKALKDGPANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFVTVTLKAHHTLLV 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4843g00002 787 FunFam Glutamate receptor 737 772 - -
Gabi4843g00002 787 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Gabi4843g00002 787 Gene3D - 147 427 - -
Gabi4843g00002 787 Pfam Ligand-gated ion channel 589 692 IPR001320 GO:0015276|GO:0016020
Gabi4843g00002 787 Gene3D - 578 711 - -
Gabi4843g00002 787 SMART GluR_14 468 781 IPR001320 GO:0015276|GO:0016020
Gabi4843g00002 787 FunFam Glutamate receptor 147 307 - -
Gabi4843g00002 787 FunFam Glutamate receptor 462 578 - -
Gabi4843g00002 787 Pfam Bacterial extracellular solute-binding proteins, family 3 525 756 IPR001638 -
Gabi4843g00002 787 SUPERFAMILY Periplasmic binding protein-like II 443 775 - -
Gabi4843g00002 787 Gene3D - 458 577 - -
Gabi4843g00002 787 PIRSF IGluLR_plant 1 777 IPR017103 -
Gabi4843g00002 787 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Gabi4843g00002 787 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 775 IPR015683 -
Gabi4843g00002 787 FunFam Glutamate receptor 578 708 - -
Gabi4843g00002 787 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Gabi4843g00002 787 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Gabi4843g00002 787 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Gabi4843g00002 787 SUPERFAMILY Periplasmic binding protein-like I 26 458 IPR028082 -
Gabi4843g00002 787 Gene3D - 49 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4843g00002 Gabi-Chr4843 110676 114858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4843g00002 1 774 Ion Channels AT1G42540 59.593 0.0 946