Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4842g00006 ATGCTCCCCATGCCACCTTCTCGGGTGGCAGGAGGGTTAACCCAGTCGTCATCAAGTTCTGGAATTTTCTTTCAAGGAGATGGACAGTCACAGAATATAGTTAACTCTCGCTTAAGCTCATCTTTTGTTAACTCATCTAACACAGTTCCAGGAACTGGTGGTTCGAATCCAGGTCCACGTTCTGGGGATTTGAATAATACAGTTTTGAACAGTGTGGGAAACTCAGCACCAAGTGTTGGAGCCAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGGCCCCCATATGCAGAGAAGTGCAAGCATTAACGGAGACGCATACATACGATTACCTGCCTCACCCATGTCATTCACATCAAATAATATTAATATTGCTGGATCGCCAGTGATGGATGGTTCCTCTGTTGTACAAAAGAGCTCTCATCAAGAGCACAGTGTTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAACACTACATCTTTTCCAGCATCTCAAACTGGCCCTTCACACCAAATGGGTGCACAAGTACCAGGATCTTTTATTCAAGATCCAAATAATATTTCCCAGATGTCGAAGAAACCTAGGCTGGATATGAAGCAGGATGATATAGTCCAACAGCAGGTAATACAGCAGCTTCTTCAGAGACAAGATCCCATGCTGTTCCAGGGTCGTAATCCGCAGTTACAGGCTTTGCTTCAGCAGCAGCAGCAGCAGCAGAGACTGAGACAACAACATATCTTTCAGTCAATGCCACAGTTACAGAGAGTTCAACTGCAACAGCAGCAGCAACAACAACAACAAATGCAGTTAAGGCAGCAATTACAGCCACAAGTGATGCAACCCTTATCTGCTGGGAAGCGCCCATATGACAGTACTGTTAATGGTGTGTGCGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGGCAACGACCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGTCGAATATTACTCGCCTCGCGCAAAGAAACGGTGGTGCTTGTCATTATATAATAATGTTGGGCCTCATGCACTTGGTGTGTTCCCCCAAGCAGCTATGGATACATGGCACTGTGACTTATGTGGTTCTAAATCTGGAAGGGGATTTGAAACAACTTTTGAAGTACTGCCAAGACTTAATGAAATCAAATTTGCCAGTGGAGTGATCGATGAACTTATGTTTTTGGACTTGCCACGTGAATTTAGATTTCCTTCTGGTGTAATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAACAGCTTCGTGTTATTCGTGAGGGTCAACTTCGTATCATATTCACTCAAGACCTGAAGATATTGTCTTGGGAGTTCTGTGCAAGGGGCCATGAAGAACTTCTTTCTAGAAGGTTAGTTGCACCACAGGTCAACCAATTAGTTCAAGTGGCTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGTCTGATGGGGTTTCTCAGCAAGACTTGCAAACAAACAGCAACATGGTATTGACAGCTGGGCGTCAGCTTTCAAAGAGTTTGGAGTTACAATCGCTAAATGATTTCGGCTTTTCCAAAAGATATGTGAGATGTTTGCAGATTTCTGAGGTTGTCAATAGCATGAAAGATCTAATAGATATCTGTCGAGATCACAAAATTGGGGCAATTGAGAGCTTGAAAAACTATCCTAGACTTGGTACTGCGGCAAAGCTCCAGATGCAAAAGATGCAGGAGATGGAACAGCTAGCAAATGTTCAAGGTCTGCCAACTGATCGAAACACGCTTAATAAGCTAATGGCAATGAATCCTGGAATGAACAACCAAATAAACAACAATCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCACAAGCTGCTTTGGCACTGACCAACTACCAGAATCTTCTCATGAGGCAAAATTCAGTGAATTCATGCCCGGGCTCTCTTCAGCGAGAAGGATCATCCTCCTTCAATAATTCGAACCAGAGTCCTTCTTCAGCTTTGCAAGGTGCTGGTACTGTTTTGGTTCCAGGCTCAATGCAGAACTCGCCTGTTAGTGGTTTCCCAAGTCCCCGTCTACCCCCGCAGCAGCAGCAGCAGCAGCACCAACTTCAACAGCGCTCGTTAAGTGCAATTAATTTACTGCAACAAAATCATTCACAGGGATCTCAAGGAAATCAAGCTCTACAACAGCAGATGATCCAACAACTTCTGCAGGAGATGTCAAATAACAATGGGGGTGGGCAACCACAATCTCTTGGACCAACTGCTAATGGGAATATGGCAAAGAATGGGTTGAGTTTTGCAGGCCACACTCCACCCATAACTGGAGGTTCTGCCAATGTTGCTGTAAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAATCGGCTTCAAACATTGATTCTCCTGCTGCTGGTGGCAACAATGGATTCAACCAGAGAGCATCTGATATGCAACAAAATCTCCATTTCCAAGATGTTCAGGATATTGCCAATGAGTTCACGGATAACACCTTCTTTAACAGTGATCTAGATGATAGCATGGGTTATGGCTGGAAGGCATGA 2592 0.4394 MLPMPPSRVAGGLTQSSSSSGIFFQGDGQSQNIVNSRLSSSFVNSSNTVPGTGGSNPGPRSGDLNNTVLNSVGNSAPSVGASSLVTDANSALSGGPHMQRSASINGDAYIRLPASPMSFTSNNINIAGSPVMDGSSVVQKSSHQEHSVQQLQQNQQQLQGASNTTSFPASQTGPSHQMGAQVPGSFIQDPNNISQMSKKPRLDMKQDDIVQQQVIQQLLQRQDPMLFQGRNPQLQALLQQQQQQQRLRQQHIFQSMPQLQRVQLQQQQQQQQQMQLRQQLQPQVMQPLSAGKRPYDSTVNGVCARRLMQYLYHQRQRPNDNSIAYWRKFVVEYYSPRAKKRWCLSLYNNVGPHALGVFPQAAMDTWHCDLCGSKSGRGFETTFEVLPRLNEIKFASGVIDELMFLDLPREFRFPSGVMMLEYAKAVQESVYEQLRVIREGQLRIIFTQDLKILSWEFCARGHEELLSRRLVAPQVNQLVQVAQKCQSTIAESGSDGVSQQDLQTNSNMVLTAGRQLSKSLELQSLNDFGFSKRYVRCLQISEVVNSMKDLIDICRDHKIGAIESLKNYPRLGTAAKLQMQKMQEMEQLANVQGLPTDRNTLNKLMAMNPGMNNQINNNHNMVNRGALSGSAQAALALTNYQNLLMRQNSVNSCPGSLQREGSSSFNNSNQSPSSALQGAGTVLVPGSMQNSPVSGFPSPRLPPQQQQQQHQLQQRSLSAINLLQQNHSQGSQGNQALQQQMIQQLLQEMSNNNGGGQPQSLGPTANGNMAKNGLSFAGHTPPITGGSANVAVNNGPVSRSNSFKSASNIDSPAAGGNNGFNQRASDMQQNLHFQDVQDIANEFTDNTFFNSDLDDSMGYGWKA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 133 203 - -
Gabi4842g00006 863 Pfam LIM-domain binding protein 306 566 IPR029005 -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 44 73 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 749 781 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 133 199 - -
Gabi4842g00006 863 Coils Coil 259 279 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 651 714 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 749 773 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4842g00006 863 PANTHER LIM DOMAIN-BINDING PROTEIN 44 849 IPR029005 -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 10 25 - -
Gabi4842g00006 863 MobiDBLite consensus disorder prediction 798 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4842g00006 Gabi-Chr4842 86737 93410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4842g00006 301 570 C2H2 Transcription Factor Family AT1G43850 58.148 1.90e-104 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4842g00006 - - gmx:100816886 1213.75