Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4840g00002 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGCAAATGCAAGTATATCGACGAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATCAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTCTTGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1530 0.3993 MKRVRDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMRQMQVYRRKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDIRINRDQDEREPDHINAQQFLEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4840g00002 509 Gene3D Paired amphipathic helix 11 82 IPR036600 GO:0006355
Gabi4840g00002 509 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi4840g00002 509 SMART hdac_interact2seq4b 336 436 IPR013194 -
Gabi4840g00002 509 MobiDBLite consensus disorder prediction 83 172 - -
Gabi4840g00002 509 MobiDBLite consensus disorder prediction 119 148 - -
Gabi4840g00002 509 PANTHER SIN3B-RELATED 9 509 IPR039774 GO:0003714
Gabi4840g00002 509 ProSiteProfiles PAH domain profile. 206 276 IPR003822 GO:0006355
Gabi4840g00002 509 Gene3D Paired amphipathic helix 204 277 IPR036600 GO:0006355
Gabi4840g00002 509 Coils Coil 409 439 - -
Gabi4840g00002 509 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi4840g00002 509 Pfam Paired amphipathic helix repeat 228 273 IPR003822 GO:0006355
Gabi4840g00002 509 Pfam Sin3 family co-repressor 338 430 IPR013194 -
Gabi4840g00002 509 SUPERFAMILY PAH2 domain 207 274 IPR036600 GO:0006355
Gabi4840g00002 509 MobiDBLite consensus disorder prediction 294 319 - -
Gabi4840g00002 509 MobiDBLite consensus disorder prediction 89 109 - -
Gabi4840g00002 509 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi4840g00002 509 FunFam Paired amphipathic helix protein SIN3 203 278 - -
Gabi4840g00002 509 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi4840g00002 509 MobiDBLite consensus disorder prediction 157 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4840g00002 Gabi-Chr4840 4450 7954 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4840g00002 Sin3_corepress 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4840g00002 K11644 - gmx:100807181 788.489