Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4839g00004 ATGGAGGGTCATCATCATCTCCATCAACAACAACATCATCATCAAAGGCAACAACAACATCATCATCAACAACAACAACAACAACAACATCCTCATAACATCACAAGTGTTAACGTGGATGTCACAGACAAGTTCCCTCAATGGAGCATCCAAGAGACAAAAGAGTTCCTCATGATTCGAGCAGAGTTGGATCAAACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTTATCTCCAATAGGATGAAGGAAAAGGGTTATCATAGAAGTTCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGCTACCCGCTATAAGGGATGTGAAACAATGGAGCAAGAAGCTTATAAGCAGCAATTTCCATTTTACAATGAACTTCAAGCGATTTTCACTGCAAGGATGCAGAGAATGCTGTGGGCTGAAGCAGAAGGAGGGTCGAAGAAGAAGGGTACTATGCAGCTCTCATCTGAGGATGAAGAAGATTGCAATATTAATGAAGATAGTCAAGGAGATATTCAAAAGGGTAATAATGGAAGAAAGAAGAGAAAGGGTAAGATGGTTATTGGTGGAGGAAGTGGTAATAGTGGTAGCAACATGAACAACTTGAAGGAGATTCTAGAAGATTTCATGAGGCAACAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGAGAGAATGAGAGGAGGTTGAAGGAGATGGAGTGGAGACAAACCATGGAAGCATTAGAGAATGAGAGGATAATGATGGATCAAAGATGGAGGGAAAGTGAAGAACAAAGAAGGGTTAGAGAAGAAGCTAGGGCTGACAAAAGAGATGCTTTGATCACTGCTCTGTTGAATAAGCTCACAAGAGAACAAGAGATGTAG 882 0.4116 MEGHHHLHQQQHHHQRQQQHHHQQQQQQQHPHNITSVNVDVTDKFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEVISNRMKEKGYHRSSEQCKCKWKNLATRYKGCETMEQEAYKQQFPFYNELQAIFTARMQRMLWAEAEGGSKKKGTMQLSSEDEEDCNINEDSQGDIQKGNNGRKKRKGKMVIGGGSGNSGSNMNNLKEILEDFMRQQMQMEAQWMEAFEARENERRLKEMEWRQTMEALENERIMMDQRWRESEEQRRVREEARADKRDALITALLNKLTREQEM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4839g00004 293 MobiDBLite consensus disorder prediction 147 201 - -
Gabi4839g00004 293 CDD GT1 46 111 - -
Gabi4839g00004 293 Gene3D - 48 109 - -
Gabi4839g00004 293 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4839g00004 293 Pfam Myb/SANT-like DNA-binding domain 47 131 IPR044822 -
Gabi4839g00004 293 ProSiteProfiles Myb-like domain profile. 48 104 IPR001005 -
Gabi4839g00004 293 PANTHER FI21293P1 9 288 - -
Gabi4839g00004 293 FunFam Zinc finger and SCAN domain-containing 20 48 109 - -
Gabi4839g00004 293 Coils Coil 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4839g00004 Gabi-Chr4839 46479 47785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4839g00004 22 290 Trihelix Transcription Factor Family AT2G38250 52.330 4.10e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi4839g00004 Myb_DNA-bind_4 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4839g00004 - - tpra:123892994 409.838