Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4839g00003 ATGGGAAATTGCTGCAGATCTCCGGCCGCTGTCGCCCGAGAGGACGTCAAATCCAGCTTCTCCGGCCACGATCACGGCAAGCGCGGGGGAGACTCCGCCTCCGCCGTCGGGAACAAGAAGAAGGCGCCGATCACGGTCCTTGCCGGAGTACCAAAGGAGAACATCGAGGACCGGTACCTGGTGGACCGCGAGCTCGGGCGCGGCGAGTTCGGCGTCACGTACCTCTGCATCGACCGCGACACGAGGGAGCTCCTCGCCTGCAAGAGCATCTCGAAGCGGAAGCTGAGGACCGCCGTCGACGTGGATGATGTGCGCCGCGAGGTTGCTATCATGCGCCACCTTCCGAAGAGCTCAAGCATCGTGGCTCTCCGAGAGGCCTTCGAGGACGACAATGCGGTGCACATTGTGATGGAGCTATGCGAGGGCGGTGAGCTCTTCGACCGCATCGTCGCCCGCGGACACTACACGGAGCGTGCCGCAGCATCAGTCACGAGAACCATCGTGGAGGTCGTGCAGCTCTGCCACAAGCATGGGGTTATCCACAGGGACCTGAAGCCCGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCGCCTCTCAAGGCTATTGATTTTGGGCTCTCTATATTCTTCAAGCCAGGTGAGAGGTTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAAGTGCTCAAGCGGAACTATGGACCAGAAATAGATATATGGAGTGCTGGAGTAATTCTCTATATCTTATTGTGTGGTGTTCCCCCATTTTGGGCTGAATCTGAACAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAGGCAAATGTTAGAACCAGACCCTAAGCTTCGTTTAACTGCCAAACAAGTGCTTGAGCATCCCTGGCTCCTAAATGCTAAGAAGGCTCCTAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTTTCAATGATGAACAGATTCAAAAGAAAAGCTCTTAGGGTCATTGCTGATTTCTTATCCACTGAAGAAGTTGAAGACATCAAAGATATGTTCAAGAAGATGGATACTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTTCAAAACAATGGGTCCCAACTTGCTGAGTCTGAAGTTCAGATGCTTATTGAATCTGTGAGTGTAGGTAATAATGGTAAGGGAACACTAGACTACGGAGAATTTGTTGCTGTTTCCCTTCATTTAAAAAGGATGGCTAATGATGAGCATATTCGCAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATATATTGAACCAGATGAGTTACGGAATGCCTTAATGGAAGATGGAGCAGATGACTGTACGGATGTTGCAAATGATATTTTCCAAGAAGTAGATACAGACAAGGATGGACGCATCAGCTATGATGAATTTGTAGCTATGATGAAAACTGGGACGGATTGGAGAAAAGCATCTAGGCATTATTCGCGTGGGAGATTCAATAGCTTGAGCTTAAAGTTGATGAAAGATGGTTCTTTAAACTTAGGAAATGAGTAG 1608 0.4807 MGNCCRSPAAVAREDVKSSFSGHDHGKRGGDSASAVGNKKKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVDDVRREVAIMRHLPKSSSIVALREAFEDDNAVHIVMELCEGGELFDRIVARGHYTERAAASVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLLNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSTEEVEDIKDMFKKMDTDNDGIVSIEELKAGFQNNGSQLAESEVQMLIESVSVGNNGKGTLDYGEFVAVSLHLKRMANDEHIRKAFSYFDKDGNGYIEPDELRNALMEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSLNLGNE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4839g00003 535 SUPERFAMILY Protein kinase-like (PK-like) 49 342 IPR011009 -
Gabi4839g00003 535 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Gabi4839g00003 535 MobiDBLite consensus disorder prediction 15 36 - -
Gabi4839g00003 535 Pfam EF-hand domain pair 437 500 IPR002048 GO:0005509
Gabi4839g00003 535 CDD STKc_CAMK 58 316 - -
Gabi4839g00003 535 Gene3D Phosphorylase Kinase; domain 1 60 144 - -
Gabi4839g00003 535 CDD EFh 438 500 IPR002048 GO:0005509
Gabi4839g00003 535 SUPERFAMILY EF-hand 346 526 IPR011992 -
Gabi4839g00003 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 495 - -
Gabi4839g00003 535 FunFam Calcium-dependent protein kinase 7 326 503 - -
Gabi4839g00003 535 FunFam Calcium-dependent protein kinase 1 61 144 - -
Gabi4839g00003 535 Gene3D - 326 503 - -
Gabi4839g00003 535 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4839g00003 535 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4839g00003 535 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Gabi4839g00003 535 SMART efh_1 438 466 IPR002048 GO:0005509
Gabi4839g00003 535 SMART efh_1 364 392 IPR002048 GO:0005509
Gabi4839g00003 535 SMART efh_1 474 502 IPR002048 GO:0005509
Gabi4839g00003 535 Pfam EF hand 364 390 IPR002048 GO:0005509
Gabi4839g00003 535 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Gabi4839g00003 535 FunFam calcium-dependent protein kinase 13 145 325 - -
Gabi4839g00003 535 Pfam Protein kinase domain 61 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4839g00003 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gabi4839g00003 535 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Gabi4839g00003 535 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Gabi4839g00003 535 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Gabi4839g00003 535 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Gabi4839g00003 535 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4839g00003 Gabi-Chr4839 15923 23589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4839g00003 1 411 EF-hand Containing Proteins AT3G51850 86.861 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4839g00003 Pkinase 7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4839g00003 K13412 - gmx:100783922 990.334