Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4837g00006 ATGACTTCAATGACACCACTAGTTCCTTCCCCTTCTTCAGTTTTCATCAATCTATTGTCAAGTCAAGGTTGTTTTGTGGTCTTTGAGGAGGAAGTTGGAAACATATGTGCTTCAACGATTGTAGCAATTGTAGCAATTGTTGTCCCAAATGTTATTTTGGTGGCGCTTTTGGTTCTAGGCTGTTGCTGTTGCTGGAGAAGAAGGCGAAACAAAAACCATGATGCAGATCTAGAAATGGGAGATAGCAGTAATTGTTTTGTCAAGAAGAGTTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAGGTTCTCGAATGAGAAGAAGATAGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATCCAGAAGCTCCTTGCAGGGTGACATAGAATTCAGGAACGAGGCTGCACTTGTTGCACTTCAACATAGAAATTTAGTTAGGCTTTTAGGATTTTGCTTGGAGGGAGCAGAGAGGATACTTGTTTACGAATTCATCCCCAATTCAAGCCTTGACCGCTTTCTATGTGATCATGAGAACCAAGCAGAGCTTGATTGGGCAACACGTTACCAAATTATAGTTGGGATTGCTGGAGGAGTTAAATACCTCCATGAAGATTCTAGTCTTAGAATAATACATCGCGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAACAGAAAGGATAGTTGGAACTTATGGTTACATGGCTCCTGAATATGCAATGTATGGAGAATTATCTGTGAAATCCGATGTGTTCAGCTTCGGAGTCTTGCTTTTGGAGATCATTAGTGGCACGAAGAACACGAGTTATTGTCAATCACATGATTATGATGACCTTTTGAGCTATGCTTGGAAAAATTGGAAGAATCAAACACCTTTCCTTATTTTGGACCCAAAACTGAGAGGTTGGTATTCTAGAAATGAAGCTCAGAGATGCATCCATATTGCTTTATTATGCGTTCAAGAAAATCCAGCTGACAGACCTTCAATGGCGAGTGTAGTACTTTGGTTGAACAGTTATTCAGTAACCTTAGCATTACCTCGACAGCCAGCATCTGTTTTTCTAGGAAGCCCTTCACCAGACAGATTAAGACACCAGCTTTATTCTGATCGGTCTACCAGCTCTATCTCTATGAATAATTATTTAATTACTGAAATATATCCCCGATAA 1290 0.4008 MTSMTPLVPSPSSVFINLLSSQGCFVVFEEEVGNICASTIVAIVAIVVPNVILVALLVLGCCCCWRRRRNKNHDADLEMGDSSNCFVKKSLHFDLATIEAATNRFSNEKKIGQGGFGVVYKGTLPNGQEIAAKRLSRSSLQGDIEFRNEAALVALQHRNLVRLLGFCLEGAERILVYEFIPNSSLDRFLCDHENQAELDWATRYQIIVGIAGGVKYLHEDSSLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTTERIVGTYGYMAPEYAMYGELSVKSDVFSFGVLLLEIISGTKNTSYCQSHDYDDLLSYAWKNWKNQTPFLILDPKLRGWYSRNEAQRCIHIALLCVQENPADRPSMASVVLWLNSYSVTLALPRQPASVFLGSPSPDRLRHQLYSDRSTSSISMNNYLITEIYPR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4837g00006 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Gabi4837g00006 429 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 420 - -
Gabi4837g00006 429 FunFam Cysteine-rich receptor-like protein kinase 10 66 179 - -
Gabi4837g00006 429 Pfam Protein tyrosine and serine/threonine kinase 107 374 IPR001245 GO:0004672|GO:0006468
Gabi4837g00006 429 Gene3D Transferase(Phosphotransferase) domain 1 180 385 - -
Gabi4837g00006 429 SUPERFAMILY Protein kinase-like (PK-like) 90 416 IPR011009 -
Gabi4837g00006 429 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Gabi4837g00006 429 CDD STKc_IRAK 111 374 - -
Gabi4837g00006 429 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Gabi4837g00006 429 ProSiteProfiles Protein kinase domain profile. 105 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4837g00006 429 SMART serkin_6 105 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4837g00006 429 FunFam cysteine-rich receptor-like protein kinase 10 180 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4837g00006 Gabi-Chr4837 99824 102665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4837g00006 41 429 Receptor kinase-like Gene Family AT4G05200 51.889 1.16e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4837g00006 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4837g00006 - - ccaj:109806163 551.592