Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4837g00004 ATGAATGATCAGTGTGAGGAGTGTTTGCAAAATGCAATCGGAACTCTTACTATGTGTTGTGGGGGGAAACAGGGTGCGAGAGCTATGCTAGCATGGTGTAATATTAGATACGATCTGTACAAGTTTTATTATACAACTGAAACATCAGCAGCACCGCCCCTGGTTCCTTCTCATCCTCCTCCTTCAGTTGGGGATGAAAGTGGCACAATACAGTCGCTACAGTTCAATTTGGCCACAATTGAGGCTGCCACAAATAAGTTTTCCTATGAAAACAAAATAGGAAAACGTGGATTTGGAGAGGTTTACGAGGGTGTTCTTTTAGATGGACGAGAAATAGCTGTAAAAAAACTCTCGCAAAGTTCACGACAAGGTGTAGTAGAATTCAAGAATGAGGTTTTGTTAATAGCAAAACTTCAACACAGAAATCTTGTAACATTATTAGGATTTTGCTTGGAAGAACAGGAGAAAATGCTTATTTATGAATTTGTGCCCAATAAAAGTCTTGATTACTTTTTATTCGATAACAACATGAATCCAAAAAACTCAGATTTTGGCATGGCAAGGATGGTTGCTATAGATCAAGATCAAGGAAATACTAATAGAGTTGTTGGAACATTTGGTTATATGTCTCCAGAATATATAAAGTATGGGCAATTTTCAGAAAAGTCTGATATCTTTAGCTTTGGAGTCATAGTTTTGGAGGTCATTATTGCTAAAAGGAATGCCCATCCTCTTGTATCATCAGATGATGATAGCCTCCTAGCTTATTATCGCTCACTCTCCTTTTGTGCAAACTGA 798 0.3784 MNDQCEECLQNAIGTLTMCCGGKQGARAMLAWCNIRYDLYKFYYTTETSAAPPLVPSHPPPSVGDESGTIQSLQFNLATIEAATNKFSYENKIGKRGFGEVYEGVLLDGREIAVKKLSQSSRQGVVEFKNEVLLIAKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDNNMNPKNSDFGMARMVAIDQDQGNTNRVVGTFGYMSPEYIKYGQFSEKSDIFSFGVIVLEVIIAKRNAHPLVSSDDDSLLAYYRSLSFCAN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4837g00004 265 ProSiteProfiles Gnk2-homologous domain profile. 1 42 IPR002902 -
Gabi4837g00004 265 Pfam Protein tyrosine and serine/threonine kinase 89 175 IPR001245 GO:0004672|GO:0006468
Gabi4837g00004 265 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 47 173 - -
Gabi4837g00004 265 ProSiteProfiles Protein kinase domain profile. 87 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4837g00004 265 SUPERFAMILY Protein kinase-like (PK-like) 59 240 IPR011009 -
Gabi4837g00004 265 Gene3D - 1 42 IPR038408 -
Gabi4837g00004 265 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 56 162 - -
Gabi4837g00004 265 Gene3D Phosphorylase Kinase; domain 1 64 162 - -
Gabi4837g00004 265 Gene3D Transferase(Phosphotransferase) domain 1 167 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4837g00004 Gabi-Chr4837 81505 85475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4837g00004 2 242 Receptor kinase-like Gene Family AT4G05200 41.691 3.80e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4837g00004 PK_Tyr_Ser-Thr 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4837g00004 - - vvo:131648390 339.347