Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4837g00001 ATGTTTGACTGTGGTTACAAGTCGCAATACGTGGATGGCCAGCGGGAAAAGTTTGTGAGGTTGGATGACATGGATTCTAGACTATCATCATCTTCTAATGCTGGAGTTAGAACATCTGGATTTAGTATTGATAAATTAAGTCAAGGGGGCCACAGAAGCTGCACAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAACGGATCTGAAGGACTGAAGTCAATTGGTCGGTCACTTGGATTTGGGGTATCTAGCGCAGTGTTCCCGGAAGATCTTCAAGTTTCAGAAAAGAAGATATTTGACCCTCAAGATGAATTTTTGCTCTTGTGGAATAAGCTTTTTGTCATCTCCTGCATTTTGGCTGTGTCTGTGGATCCACTGTTTTTTTATCTACCTGTCATCAATGATTCATTACTCTGTCTTGGAATAGACCGAAAGTTGGCAATTATAGTTACCACTGTGAGGACAGTTATCGATGTGTTCTATCTTATACACATGGCTCTTCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACTTACGGCGGTATTTCATCATTGATTTCCTATCAGTGTTACCCTTACCACAGATCGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTACATTCCTAGATTTCTACGGATGGTACCCTTGACTTCCGAACTTAAGAGAACAGCTGGTGTCTTAGCTGAAACTGCTTGGGCAGGTGCTGCATATTATTTGCTATTATTCATGCTTGCCAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTCAACGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAATAAAAAGTTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTACATGGCAGAATAAAAGTGAAGATATTCTTACGTCGCAGTGCTCTGCAGATGGTGATAATCCACCTTTTGATTATGGAATTTTCTCACAAGCCTTGACATCTGGTATTGTTTCATCTAAGAAGTTCGTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTTCAACTAGCACCTACACCGGGGAGGTTATCTTTTCAATAGCACTAGCCATAGCTGGGCTTATCCTGTTTGCACTTCTGATCGGTAACATGCAGACATATCTGCAGTCTCTCACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTACTCCCACAAGAGCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGCGGAGTAGATGAAGATAGTTTGGTTCAGAGTCTACCAAAGGATCTTCAAAGAGACATTAAGCGACACCTCTGTCTTGCTTTAGTGAGAAGGGTTCCACTATTTGAGAATATGGATGAGAGATTGCTTGATGCCATTTGTGAGAGACTGAAGCCATGTTTATTTACGGAAAGTACTTACATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATTCGTGGTCGCCTCGAAAGTGTTACCACAGATGGTGGTAGGAGTGGATTTTTTAATCGCGGTTTTTTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTTTAACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGTACAGTTAGGGCATTAACCGAGGTTGAGACTTTTGCCTTAACTGCTGAAGAGTTAAAATTTGTTGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTTCAGCACACGTTCCGCTTTTATTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGACGGTATTCCAAACGGAAAAATATGGAGCTTCGTCGAAAGGAGGAACATGATGACTCGGAAAGAGCTCGCAGCAATGCCAGTGGCAGTTCATACAGCCTTGGTGCTACCTTCTTGGCATCTAGGTTTGCCGCTAATGCTCTTCGTGGTGTACATCGTAATCGGAATGCTAAAAGTGCGAGGGAGTTAATGAAATTGCAGAAACCTCCAGAGCCTGACTTTACTGCAGCAGATGATGCAGATTAA 2202 0.4332 MFDCGYKSQYVDGQREKFVRLDDMDSRLSSSSNAGVRTSGFSIDKLSQGGHRSCTTSRSFKRGMRNGSEGLKSIGRSLGFGVSSAVFPEDLQVSEKKIFDPQDEFLLLWNKLFVISCILAVSVDPLFFYLPVINDSLLCLGIDRKLAIIVTTVRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFIILLQYIPRFLRMVPLTSELKRTAGVLAETAWAGAAYYLLLFMLASHIVGSFWYLLAVQRNDFCWQKACSDNGYNKKFLYCGNQYMEGYSTWQNKSEDILTSQCSADGDNPPFDYGIFSQALTSGIVSSKKFVSKYCYCLWWGLQNLSTLGQGLSTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEDSLVQSLPKDLQRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVRALTEVETFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKNMELRRKEEHDDSERARSNASGSSYSLGATFLASRFAANALRGVHRNRNAKSARELMKLQKPPEPDFTAADDAD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4837g00001 733 Gene3D Helix hairpin bin 433 496 - -
Gabi4837g00001 733 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4837g00001 733 MobiDBLite consensus disorder prediction 706 733 - -
Gabi4837g00001 733 SMART cnmp_10 505 636 IPR000595 -
Gabi4837g00001 733 MobiDBLite consensus disorder prediction 707 727 - -
Gabi4837g00001 733 Pfam Cyclic nucleotide-binding domain 527 616 IPR000595 -
Gabi4837g00001 733 Gene3D Jelly Rolls 503 623 IPR014710 -
Gabi4837g00001 733 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4837g00001 733 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Gabi4837g00001 733 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Gabi4837g00001 733 FunFam Cyclic nucleotide-gated ion channel 1 432 496 - -
Gabi4837g00001 733 Gene3D - 112 430 - -
Gabi4837g00001 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 90 726 - -
Gabi4837g00001 733 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Gabi4837g00001 733 MobiDBLite consensus disorder prediction 662 676 - -
Gabi4837g00001 733 MobiDBLite consensus disorder prediction 662 681 - -
Gabi4837g00001 733 CDD CAP_ED 505 636 IPR000595 -
Gabi4837g00001 733 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4837g00001 Gabi-Chr4837 30281 38832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4837g00001 1 730 Ion Channels AT2G23980 75.733 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4837g00001 K05391 - gmx:100820202 1318.52