Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4836g00006 ATGCATGGAAAAAAAGACCAAGAGCATATAAGAAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTATGGTCCTAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTACAAAGGACTGGCAAATCATGTCGTCTTCGTTGGGTCAATAAGCTCCGACCAAACCTCAAGAATGGGTGCAAGTTTTCACTAGAGGAAGAGAGGGTTGTCATAGAGTTGCAAGCACAATTTGGTAACAAATGGGCCAAAATTGCATCTTATTTGCCTGGTAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGATTCTGCAGACATCAGCAACAACCTCCAAATCACAGAAAAACAAAACTAAAGTTCCTACCGTTCTTGATGTTCCAACTTCGGAGGCTCCTAAGTTCAGTTCCTCATCAGAGGGAGAACCTTCATCAAAGCCTCAGTCATGTTCATTATCCTGCATTGAGAATTCCGATGTTATCAAAATGGTGCCATTACCAGATCTTATAAAGTTCGAGATGCATAGTTCTGACACAAACCATGTTGAACAAGAGTTCACCCCTTTTGATAGCTATAATAAAAGCACTGAACAGATTACCTTCCCACAGATTTCAGAACTCAACACTGATGTTACATTCTCAATGGGAAACCAAGACCTCTTGGCAAGAATTGATGAGCCAAATTTTATTGATGTCTTTGATCCTCTTGTTGCATCTGAATTTGGAATAGGTCCACAACATTCCATTGGGTTCCCTTTCTTTGAGCCATCAGGAAGTTGCAGAATTGGGACAAGGGATACAATTGATAACTCCAAAAATAGTCACAGTTTCTTTGATGATTTCCCAGTGGACATATTTGATGATCCCATGGAGCCACCTGCAAGCCCATCCAATGTGTAA 939 0.4153 MHGKKDQEHIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSATTSKSQKNKTKVPTVLDVPTSEAPKFSSSSEGEPSSKPQSCSLSCIENSDVIKMVPLPDLIKFEMHSSDTNHVEQEFTPFDSYNKSTEQITFPQISELNTDVTFSMGNQDLLARIDEPNFIDVFDPLVASEFGIGPQHSIGFPFFEPSGSCRIGTRDTIDNSKNSHSFFDDFPVDIFDDPMEPPASPSNV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4836g00006 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Gabi4836g00006 312 MobiDBLite consensus disorder prediction 119 163 - -
Gabi4836g00006 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Gabi4836g00006 312 Gene3D - 4 65 - -
Gabi4836g00006 312 FunFam Transcription factor GAMYB 67 136 - -
Gabi4836g00006 312 Pfam Myb-like DNA-binding domain 15 73 - -
Gabi4836g00006 312 PANTHER TRANSCRIPTION FACTOR DUO1 4 311 - -
Gabi4836g00006 312 SMART sant 11 61 IPR001005 -
Gabi4836g00006 312 SMART sant 65 113 IPR001005 -
Gabi4836g00006 312 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Gabi4836g00006 312 Gene3D - 67 137 - -
Gabi4836g00006 312 FunFam MYB transcription factor 12 64 - -
Gabi4836g00006 312 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gabi4836g00006 312 CDD SANT 68 107 IPR001005 -
Gabi4836g00006 312 CDD SANT 14 59 IPR001005 -
Gabi4836g00006 312 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4836g00006 Gabi-Chr4836 98990 100716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4836g00006 1 306 MYB Transcription Factor Family AT3G60460 50.779 3.74e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4836g00006 Myb_DNA-bind_6 9.4e-13 CL0123