LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4834g00004	ATGTTCTCCAAAAACAGTTCAAATCCAATCTACAACAAGAAGAAGAACCCATCATGGTTTCTCTTCACTATAGTTTTCCTCTCATCTTTACTACCCCACTCACTTTCTGATCCAAGAATCTCAGAAGCTGGACTCTATTGTGGCACATCCAAAGCCCCATTAAAAGCCAACTACATCCCAAGTTTCATCAAAGAAATGGAGAGCCTCTCACAGGTTGTTACCAACCACAACTGGGGCACTCACTTTGTGAACATCTCAGGAGCCATTCCAATCTATGGCTTTGCACAATGCTTCAAAGACCTTTCTCACACTGATTGCCTTCTCTGCTATGCTGCAAGCCGCACCAAGCTCCCTAGATGCCTCCCTTCTGTCTCTGCTCGCATATACCTTGATGGATGCTTCCTTCGCTATGATAACTATAGTTTCTACTCTGAGGTCACTGACCCTTTGATGGATACAGTTAACTGCACCTCCCAGAATGGTGTGGCTGTTGATGAAGCTGAAAGGTTTGAGCTTCAGAAGAGTGTTGCTGAAGTGGTTGATAGAGTTGCAGTGTTGGCTGTTGATAAGGGAGGTGGGTTTTCTGTGGGAGAAGTTGAGGGTGTTTATGCTTTGGCACAGTGCTGGAACACTGTTGGGAGTGATGGGTGCAGAGATTGCTTGATGAAAGCTGGGAAGGAGGTTAAAGGTTGCTTGCCAAAGAGGGAAGGGAGGGCCTTGAATGCTGGGTGTTATTTGAGATATTCAACTGAGAAGTTCTACAATGAAGAAGGTGCAGGAGAGGGTGGAAACTGGTCTTTAAGAAGAGGAGCCATAATAGCAGCAGTGTTAGCTGCAGCTGCAGTTATGATGCTTGCTTTCTCTGCCTGTTATGCAGTCTTCAGGAAATTATCAAAGATAAGAAAAGAAAACAATAATCTTGGTCAGATTTCCTCTTCTATAAGCAAATCTAGCTTGAATTACAAATACGAAACTCTTGAGAAGGCCACAGATTATTTCAACTCTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCAGTTTTCAGAGGTATTCTACCAAATGGGAAAGTTGTTGCAGTTAAGAGATTGATCTTCAATAACAGGCATTGGGTTGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATTGAACACAAGAACCTTGTCAAACTATTAGGTTGTAGCATTGAAGGGCCTGAGAGTCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAAAACTCAGATTCTAAGCTGGAAACAAAGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCATATCTTCATGGAGGCACTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGTAATGTTCTTCTGGATGAGAATCTCACTCCTAAGATTGCAGATTTTGGCCTTGCCCGGTGTTTTGCTGCTGATAAGACACATTTGAGCACTGGAATTGCTGGAACACTGTAA	1497	0.4202	MFSKNSSNPIYNKKKNPSWFLFTIVFLSSLLPHSLSDPRISEAGLYCGTSKAPLKANYIPSFIKEMESLSQVVTNHNWGTHFVNISGAIPIYGFAQCFKDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYSEVTDPLMDTVNCTSQNGVAVDEAERFELQKSVAEVVDRVAVLAVDKGGGFSVGEVEGVYALAQCWNTVGSDGCRDCLMKAGKEVKGCLPKREGRALNAGCYLRYSTEKFYNEEGAGEGGNWSLRRGAIIAAVLAAAAVMMLAFSACYAVFRKLSKIRKENNNLGQISSSISKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFRGILPNGKVVAVKRLIFNNRHWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNKTQILSWKQRFNIILGTAEGLAYLHGGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFAADKTHLSTGIAGTL	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4834g00004	498	ProSiteProfiles	Gnk2-homologous domain profile.	40	142	IPR002902	-
	Gabi4834g00004	498	ProSiteProfiles	Protein kinase domain profile.	333	498	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4834g00004	498	FunFam	Cysteine-rich receptor-like protein kinase 3	153	253	-	-
	Gabi4834g00004	498	Gene3D	-	153	253	IPR038408	-
	Gabi4834g00004	498	Gene3D	-	43	142	IPR038408	-
	Gabi4834g00004	498	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	92	498	-	-
	Gabi4834g00004	498	FunFam	Os07g0541700 protein	409	497	-	-
	Gabi4834g00004	498	FunFam	Cysteine-rich receptor-like protein kinase 2	298	408	-	-
	Gabi4834g00004	498	FunFam	Cysteine-rich receptor-like protein kinase 2	40	142	-	-
	Gabi4834g00004	498	Pfam	Salt stress response/antifungal	174	250	IPR002902	-
	Gabi4834g00004	498	Pfam	Salt stress response/antifungal	62	140	IPR002902	-
	Gabi4834g00004	498	Gene3D	Phosphorylase Kinase; domain 1	293	408	-	-
	Gabi4834g00004	498	Pfam	Protein kinase domain	334	488	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4834g00004	498	ProSiteProfiles	Gnk2-homologous domain profile.	151	253	IPR002902	-
	Gabi4834g00004	498	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	454	466	IPR008271	GO:0004672\|GO:0006468
	Gabi4834g00004	498	SMART	serkin_6	333	492	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4834g00004	498	SUPERFAMILY	Protein kinase-like (PK-like)	312	497	IPR011009	-
	Gabi4834g00004	498	Gene3D	Transferase(Phosphotransferase) domain 1	409	498	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4834g00004	Gabi-Chr4834	18631	20815	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4834g00004	20	498	Receptor kinase-like Gene Family	AT5G40380	57.231	0.0	551

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi4834g00004		Pkinase	8.9e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4834g00004	-		-	gmx:100790404	796.964