Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4834g00003 ATGTTCTCCAAAAACAGTTCAAATCCAATCTACAACAAGAAGAAGAACCCATCATGGTTTCTCTTCACTATAGTTTTCCTCTCATCTTTACTACCCCACTCACTTTCTGATCCAAGAATCTCAGAAGCTGGACTCTATTGTGGCACATCCAAAGCCCCATTAAAAGCCAACTACATCCCAAGTTTCATCAAAGAAATGGAGAGCCTCTCACAGGTTGTTACCAACCACAACTGGGGCACTCACTTTGTGAACATCTCAGGAGCCATTCCAATCTATGGCTTTGCACAATGCTTCAAAGACCTTTCTCACACTGATTGCCTTCTCTGCTATGCTGCAAGCCGCACCAAGCTCCCTAGATGCCTCCCTTCTGTCTCTGCTCGCATATACCTTGATGGATGCTTCCTTCGCTATGATAACTATAGTTTCTACTCTGAGGTCACTGACCCTTTGATGGATACAGTTAACTGCACCTCCCAGAATGGTGTGGCTGTTGATGAAGCTGAAAGGTTTGAGCTTCAGAAGAGTGTTGCTGAAGTGGTTGATAGAGTTGCAGTGTTGGCTGTTGATAAGGGAGGTGGGTTTTCTGTGGGAGAAGTTGAGGGTGTTTATGCTTTGGCACAGTGCTGGAACACTGTTGGGAGTGATGGGTGCAGAGATTGCTTGATGAAAGCTGGGAAGGAGGTTAAAGGTTGCTTGCCAAAGAGGGAAGGGAGGGCCTTGAATGCTGGGTGTTATTTGAGATATTCAACTGAGAAGTTCTACAATGAAGAAGGTGCAGGAGAGGGTGGAAACTGGTCTTTAAGAAGAGGAGCCATAATAGCAGCAGTGTTAGCTGCAGCTGCAGTTATGATGCTTGCTTTCTCTGCCTGTTATGCAGTCTTCAGGAAATTATCAAAGATAAGAAAAGAAAACAATAATCTTGGTCAGATTTCCTCTTCTATAAGCAAATCTAGCTTGAATTACAAATACGAAACTCTTGAGAAGGCCACAGATTATTTCAACTCTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCAGTTTTCAGAGGTATTCTACCAAATGGGAAAGTTGTTGCAGTTAAGAGATTGATCTTCAATAACAGGCATTGGGTTGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATTGAACACAAGAACCTTGTCAAACTATTAGGTTGTAGCATTGAAGGGCCTGAGAGTCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGATCAATTTATCTTTGAAAAGAACAAAACTCAGATTCTAAGCTGGAAACAAAGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCATATCTTCATGGAGGCACTAAAATAAGAATCATCCATAGAGACATCAAAAGCAGTAATGTTCTTCTGGATGAGAATCTCACTCCTAAGATTGCAGATTTTGGCCTTGCCCGGTGTTTTGCTGCTGATAAGACACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTCGAGGACAACTTACAGATAAAGCTGATGTTTATAGTTTTGGAGTACTTGTTATGGAGATTGTATGTGGCAGGAGGAATAATGTCTTTAGAGAGGACTCTGGCTCCCTTCTACAAACTGTTTGGAAACTTTACCGATCAAACAAATTGGCTGAAGCTGTTGATTCTTGCTTGGGAGGTGATTTTCCTGAAACTGAAGCATCAAGGGTGTTTCACATTGGATTGCTTTGCACACAAGCTTCTGCTTCCCTTAGGCCATCAATGGGCCAAGTTGTTTACATGTTAAGTAATTCAAATGTAGATGTTCCAACACCAAATCAACCCCCATTTTTGAACACTGGAGTGCTAGACTCAGATAGCTCCATTCGGTCTTATAGCACAAGCAGCTTTATATCCAATGCCTTAAAGAAGATTGGTGTGTCCTACAGCTCCTCAGAGTCTTCTAGTTCACACAACTCAGTTGGGCCATCAAAAAGTAAAGAACCAGTTATCCAAGCTTGA 2019 0.419 MFSKNSSNPIYNKKKNPSWFLFTIVFLSSLLPHSLSDPRISEAGLYCGTSKAPLKANYIPSFIKEMESLSQVVTNHNWGTHFVNISGAIPIYGFAQCFKDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYSEVTDPLMDTVNCTSQNGVAVDEAERFELQKSVAEVVDRVAVLAVDKGGGFSVGEVEGVYALAQCWNTVGSDGCRDCLMKAGKEVKGCLPKREGRALNAGCYLRYSTEKFYNEEGAGEGGNWSLRRGAIIAAVLAAAAVMMLAFSACYAVFRKLSKIRKENNNLGQISSSISKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFRGILPNGKVVAVKRLIFNNRHWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNKTQILSWKQRFNIILGTAEGLAYLHGGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVMEIVCGRRNNVFREDSGSLLQTVWKLYRSNKLAEAVDSCLGGDFPETEASRVFHIGLLCTQASASLRPSMGQVVYMLSNSNVDVPTPNQPPFLNTGVLDSDSSIRSYSTSSFISNALKKIGVSYSSSESSSSHNSVGPSKSKEPVIQA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4834g00003 672 ProSiteProfiles Gnk2-homologous domain profile. 40 142 IPR002902 -
Gabi4834g00003 672 SMART serkin_6 333 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4834g00003 672 ProSiteProfiles Protein kinase domain profile. 333 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4834g00003 672 MobiDBLite consensus disorder prediction 649 672 - -
Gabi4834g00003 672 SUPERFAMILY Protein kinase-like (PK-like) 316 632 IPR011009 -
Gabi4834g00003 672 Gene3D Transferase(Phosphotransferase) domain 1 409 610 - -
Gabi4834g00003 672 CDD STKc_IRAK 339 601 - -
Gabi4834g00003 672 FunFam Cysteine-rich receptor-like protein kinase 3 154 253 - -
Gabi4834g00003 672 Pfam Protein tyrosine and serine/threonine kinase 336 599 IPR001245 GO:0004672|GO:0006468
Gabi4834g00003 672 FunFam Cysteine-rich receptor-like protein kinase 2 40 142 - -
Gabi4834g00003 672 MobiDBLite consensus disorder prediction 649 666 - -
Gabi4834g00003 672 FunFam Cysteine-rich receptor-like protein kinase 2 409 609 - -
Gabi4834g00003 672 ProSiteProfiles Gnk2-homologous domain profile. 151 253 IPR002902 -
Gabi4834g00003 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Gabi4834g00003 672 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 650 - -
Gabi4834g00003 672 Gene3D - 153 253 IPR038408 -
Gabi4834g00003 672 Gene3D - 43 142 IPR038408 -
Gabi4834g00003 672 Pfam Salt stress response/antifungal 174 250 IPR002902 -
Gabi4834g00003 672 Pfam Salt stress response/antifungal 63 140 IPR002902 -
Gabi4834g00003 672 FunFam Cysteine-rich receptor-like protein kinase 2 299 408 - -
Gabi4834g00003 672 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4834g00003 Gabi-Chr4834 17048 20815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4834g00003 20 498 Receptor kinase-like Gene Family AT5G40380 57.231 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4834g00003 PK_Tyr_Ser-Thr 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4834g00003 - - gmx:100790404 1055.05