Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4833g00001 ATGGGGACCAAGGCAAAGAAAGCTTTGAAGAAGAATTTGAAAAGGGCTCATGCTAATAAGCCATCTGCGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGGTCGCAAAATTCCCGAACAGAAACTGCCGGAGAATACTTCCTCGGTTTTGTATGTTGGCCGGATTCCCCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGACAATTTGGAACCATCAAGAGATTGAGAATTGCAAGGAATAAAAGGACAGGAAAATCAAGACATTTTGGGTTCATGGAATTTGAATCTCCCGAGGTTGCAAAAATTGTAGCTGATACTATGCACAATTATCTGCTATTTGAACACCTTCTCCAGGTTTATTTGGTACCTCCAGAGCATGTTCATCCAAAATTGTGGAGAGGATTCAATTACCGTTTCAAGCCACTGGACTCAGTTCAAATTGAACGGGAGCGACATGACAAGGAACGAACATTGGAAGAGCACAAGAAGTTGGTGGAAAATATTATGAAGCGTGACAAGAGTCGCCGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAGCCTGCTTCAAAGAAAATAAAGTTTGAAGACTGA 630 0.4254 MGTKAKKALKKNLKRAHANKPSAGADFLPLEGGPGRKIPEQKLPENTSSVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKRTGKSRHFGFMEFESPEVAKIVADTMHNYLLFEHLLQVYLVPPEHVHPKLWRGFNYRFKPLDSVQIERERHDKERTLEEHKKLVENIMKRDKSRRKRIEAAGIDYECPEIVGNIQPASKKIKFED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4833g00001 209 MobiDBLite consensus disorder prediction 1 37 - -
Gabi4833g00001 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gabi4833g00001 209 MobiDBLite consensus disorder prediction 1 17 - -
Gabi4833g00001 209 SUPERFAMILY RNA-binding domain, RBD 27 138 IPR035979 GO:0003676
Gabi4833g00001 209 CDD RRM_NIFK_like 50 122 - -
Gabi4833g00001 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gabi4833g00001 209 Coils Coil 147 174 - -
Gabi4833g00001 209 Gene3D - 4 124 IPR012677 -
Gabi4833g00001 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 8 208 - -
Gabi4833g00001 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4833g00001 51 122 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 8.82e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4833g00001 K14838 - gmx:100778780 357.066