Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4830g00001 ATGACGAGAAAATTGCGCATCGTTTATGATGATCCTGATGCTACTGACTCATCTTCATCCAAAGATGAGTCAATGTTGATTGTGAAACCAAGAAAAATAAAACGAAGCATCCGTGAGATCTCACTGCCCCTTGTTTTTGCCTTCCCTACCTCCCTTGATATTAGCTCAGATGAGGGCAATGCGTTGAAGACTTGCATTGAAGGTCAACCTCAAAACAGTAAGAGGGTTTCAACCCAATCCCCTTCAATGAGGAGGCAATCTTCTGCCAAATACAGAGGTATTCGGCAGAGGAAATGGGGAAAGTGGGCTGCTGAGATTCGTGATCCGTTCAAGAGGTCCCGTGTCTGGTTAGGCACTTACAACACTGCAGAAGAGGCTTTTCAAGTCTACGAGGCCAAAAGGCTTGAATTTGAAGCTATGGCAAAGGCTCAAACCCAAAACAATGGTTCTTCTGCTGCCCTTTTAGCTGCAACTTCTGAAAAGAAAAAGATTTCTACTGCTTTGGAGGACTCGGAGAGCGTGTTCTCACAGACATTGCCATCGTCTATGCTTGAGTTGGATACCTCAGCTTCCAATTCGATGGAGAAGGATAGTATTTCAAGCAATGAAGCCGTTGAGGCCAATGATTTTCTGGCTGATCTGGCGGGGTTGGAAATACCGGATTTGAGTTTGATGAACTTGCCTCCACCATCTGCTGCTGCTGATCCGTCTGGGTCTGCTGCTGCTCCATCTGGGTCTGAGCCCAACCTTGGGCTTGATATTGATTGGTTATTGTTTGATGATTATGTGCAGAGTTTTGATGATCTTGGTGACCTGCAAGATATCCAAATTTCTGGGTTTAATGACAACGAGTCTAGTGAGATTCCTGAACTTTGA 876 0.4509 MTRKLRIVYDDPDATDSSSSKDESMLIVKPRKIKRSIREISLPLVFAFPTSLDISSDEGNALKTCIEGQPQNSKRVSTQSPSMRRQSSAKYRGIRQRKWGKWAAEIRDPFKRSRVWLGTYNTAEEAFQVYEAKRLEFEAMAKAQTQNNGSSAALLAATSEKKKISTALEDSESVFSQTLPSSMLELDTSASNSMEKDSISSNEAVEANDFLADLAGLEIPDLSLMNLPPPSAAADPSGSAAAPSGSEPNLGLDIDWLLFDDYVQSFDDLGDLQDIQISGFNDNESSEIPEL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4830g00001 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 220 - -
Gabi4830g00001 291 CDD AP2 89 154 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 SMART rav1_2 90 150 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 ProSiteProfiles AP2/ERF domain profile. 90 150 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 Gene3D AP2/ERF domain 89 148 IPR036955 GO:0003700|GO:0006355
Gabi4830g00001 291 MobiDBLite consensus disorder prediction 65 90 - -
Gabi4830g00001 291 MobiDBLite consensus disorder prediction 1 18 - -
Gabi4830g00001 291 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Gabi4830g00001 291 MobiDBLite consensus disorder prediction 65 89 - -
Gabi4830g00001 291 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4830g00001 291 MobiDBLite consensus disorder prediction 227 246 - -
Gabi4830g00001 291 SUPERFAMILY DNA-binding domain 90 137 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4830g00001 Gabi-Chr4830 9702 10621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4830g00001 3 291 AP2-EREBP Transcription Factor Family AT1G68550 34.021 1.60e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4830g00001 AP2 5.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4830g00001 - - gmx:102660769 305.449