Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4829g00002 ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCATCCTCCCACCGATTTCCTTTGGTCCAACCACAGTGTGAGCACAAAATTTGACTTTGCAGGTGGTGATGTTCCAAATCAAGAGAACACCAGGAAAAGGGGACGCACTGATTCTTGCTGCAAGGCTGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGTTTTGTGACTTGAGCTCTGTTTTGGAACCTGGGAAGCCTGTGAAAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTAATGAACTCAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATCTTTAAAGGTAGAAAAAAACGAACTCCGTGAAGAGAAAATTGTTTTGAAAGCAGATAAAGAGAGGATTGAGAAGCAGTTGAAAGTTTTGCCCATTTCACCAGCAGGGTTTATGGGTCCTCCAGTAGCTGCATATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGTTATATCCCAATGTGGCATTATCTTCCTCCATCTGCCACAGATACATCCCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 645 0.4233 MDSLEDSGCWDFLDYSFIDHPPTDFLWSNHSVSTKFDFAGGDVPNQENTRKRGRTDSCCKAGTKACREKLRREKLNERFCDLSSVLEPGKPVKTDKPAILDDAIRVLSQLKTEANELKETNEKLLEEIKSLKVEKNELREEKIVLKADKERIEKQLKVLPISPAGFMGPPVAAYQAGVNKMAVYPNYGYIPMWHYLPPSATDTSHDHELRPPAA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4829g00002 214 Coils Coil 100 155 - -
Gabi4829g00002 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
Gabi4829g00002 214 Gene3D - 63 143 IPR036638 GO:0046983
Gabi4829g00002 214 SMART finulus 65 116 IPR011598 GO:0046983
Gabi4829g00002 214 CDD bHLH_AtILR3_like 64 139 - -
Gabi4829g00002 214 FunFam Transcription factor bHLH104 62 143 - -
Gabi4829g00002 214 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Gabi4829g00002 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983
Gabi4829g00002 214 PANTHER BHLH TRANSCRIPTION FACTOR 7 214 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4829g00002 Gabi-Chr4829 82678 86256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4829g00002 49 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 70.060 2.35e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4829g00002 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4829g00002 - - gmx:100787583 343.969