Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4829g00001 ATGGATTTTGTAAGCAAAAGACACCTGATTCATGTGTTACATATGTCACAAGATCTTCCCCCCAGCATAAGTCATCCCCATTTGGGTGTACATCCTTCTAGTACAAGTTTTCCCATTATAGGAATCATTGTAATAGGAATACTGGCTACTTCTTTCTTGCTTATGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCCATTGGCACATTGTTGATCATGTTAGAGGTTTTTCTCTATCAAGCAGACATGAAGAGCCTTCTGCAGCATACTCACCAGCATCAGAGCCCAGAGGACTAGAGGAAACAGTGATTCGGTTAATCCCGGTGATTCATTACAAGACAGAAGGAAACACAGACTTTGGTGAAAGAAGCTTATGTGAATGTGCAGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTCAGGGTCATACCAAATTGTAGCCATATCTTTCATATTGATTGCATAGATGTTTGGCTTCAAAACAATGCCAATTGCCCACTTTGTAGAAGAAGCATTTCCTTGACAAGCCAAACCCATGTTGATGATCAGCTTCTCACTCCAAGGCCTTCCCCTCGGGATCATAGCACACATGTTGAAAACCTCATTGGTGGTGATGATTTTGTTGTGATTGATTTGGATAATGAACATGATACAGACCAAAACTTGCAAGGAAGACAAGAAGAAAGAGGTCCTATTAGTCCTTCACAGAGGAAGTTTGAGCAAAGAATTGTTCAGAAGAAAGCAAGGAAGCTTCATAAAGTGATAAGCATGGGAGATGAATGTATAAGTGTTAGAGCCAAAGATGGTCCTCAATCAGTTCAACCCATCAGGAGGTCCTTTTCCATGGATTCATCAGTGGACAGAAAGTTCTATCTGCCAGTTCAACAGTCTTTACAGCAACAGAATGAGGTCAACTCCATTGAAGTTTGTGGTGATAGTGGTAGAGTCAAGAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCAAGAAGTGCTGTGCTACCTGTTTATTTGGACCCCTGA 1026 0.4103 MDFVSKRHLIHVLHMSQDLPPSISHPHLGVHPSSTSFPIIGIIVIGILATSFLLMSYYIFVIKCCLHWHIVDHVRGFSLSSRHEEPSAAYSPASEPRGLEETVIRLIPVIHYKTEGNTDFGERSLCECAVCLNEFQEDEKLRVIPNCSHIFHIDCIDVWLQNNANCPLCRRSISLTSQTHVDDQLLTPRPSPRDHSTHVENLIGGDDFVVIDLDNEHDTDQNLQGRQEERGPISPSQRKFEQRIVQKKARKLHKVISMGDECISVRAKDGPQSVQPIRRSFSMDSSVDRKFYLPVQQSLQQQNEVNSIEVCGDSGRVKRSFFSFGHGSRSRSAVLPVYLDP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4829g00001 341 FunFam E3 ubiquitin-protein ligase ATL6 88 176 - -
Gabi4829g00001 341 Pfam Ring finger domain 127 170 IPR001841 -
Gabi4829g00001 341 PANTHER RING-H2 FINGER PROTEIN ATL16 22 337 IPR044600 GO:0016567|GO:0016740
Gabi4829g00001 341 SMART ring_2 128 169 IPR001841 -
Gabi4829g00001 341 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Gabi4829g00001 341 CDD RING-H2_EL5-like 127 170 - -
Gabi4829g00001 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 175 IPR013083 -
Gabi4829g00001 341 SUPERFAMILY RING/U-box 127 176 - -
Gabi4829g00001 341 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4829g00001 Gabi-Chr4829 50135 51997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4829g00001 33 341 C3H Transcription Factor Family AT1G04360 47.851 2.60e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4829g00001 - - qsu:111996165 409.068