Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4816g00004 ATGCATCTTCTTTCAGCAAGATTCGATGGTCACAATGCCTCTGAGGTGGTATTCCTGCGGAAAATCGAGGCTTTCACGCCCTCACCCATTAAAGTTGTTAACTTTCTGTCATTGTTAAACAATACCAAGGCAAAACATGAGTGGTTCTTGATTTACCTATTTGCTATACATGCTGCAATTCAAATTTTTTACTTTTTCAGCCAAACAGAGCACGTGTTTGTGTTTTTGCCTCTGAACAACTTGCTCTCTTTGTTTTTTCTGCTTAGGCGTATGAGGGCATTCAAGCGGTGGATGAAGTCTCAGGGATTCGAATGGAGCGATGCATTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCTGTGAGAGCTTTGTGCCAATTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGCCTTACCATCAAGACCAGTGGGGCACGTGAGATCATTGAAGATGCTGGTTTGGATGGTCATTTGGGGTTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGGTGACTCCCCCTGGGCTGGGTACCTTCAGCTTTTGCCTCACCAAGAGTGCTTGCCATTGGTTTGGACCCTCAATGAAGTAAACGCCCTTTTGTGTGGTACTGAGCTTCACCAGGCAGTGCAAGAAGAAAAAGCTCTTATGTATGAGGACTGGAAAGAGGATATTCTGCCCCTATTGGATTTGGCACCTTCAAAGCTTAAACCAAAATTCTTTGGTATAGAACAATACTTTGCAGCAAAAAGTCTAATTTCTTCGCGATCGTTCTCGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTGTAA 840 0.444 MHLLSARFDGHNASEVVFLRKIEAFTPSPIKVVNFLSLLNNTKAKHEWFLIYLFAIHAAIQIFYFFSQTEHVFVFLPLNNLLSLFFLLRRMRAFKRWMKSQGFEWSDALEFVDTPEEGIAVRALCQLKEGDVVAKMPKEACLTIKTSGAREIIEDAGLDGHLGLAFAIMYERSLGGDSPWAGYLQLLPHQECLPLVWTLNEVNALLCGTELHQAVQEEKALMYEDWKEDILPLLDLAPSKLKPKFFGIEQYFAAKSLISSRSFSIDDYHGFGMVPLADL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4816g00004 279 SUPERFAMILY SET domain 89 279 IPR046341 -
Gabi4816g00004 279 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 279 - -
Gabi4816g00004 279 Pfam SET domain 118 278 IPR001214 GO:0005515
Gabi4816g00004 279 Gene3D set domain protein methyltransferase, domain 1 88 279 - -
Gabi4816g00004 279 CDD SET_LSMT 108 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4816g00004 Gabi-Chr4816 115810 117401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4816g00004 89 279 NAC Transcription Factor Family AT3G56570 65.445 2.93e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4816g00004 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4816g00004 - K05302 pvu:PHAVU_007G114400g 355.91