Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4816g00003 ATGGAGTCTAACAATTTTCATGTTGACAAGAAGCCAGAGAAAAAGGTAATAAGATACAAGGAATGTCTCAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGGTGTGGTGAGTTCTTGCCTGTTGGTGAAGAAGGAACCCTTGAGGCTCTCAAGTGTTCAGCTTGCATTTGTCACAGAAACTTTCACAGAAAAGAGATAGATTCTGATTCTAATTGCCCTTCTCAGCATTATGTTCTTTCACTGATTCCTGATACTACTACTCAGACAAATCCCATTTTGGCTCATTTATTTCCCAACAAAAGTGGGTCAATTAGTCCTTCTGATCATTCTGATGAGAAGGACTATGAAGATGGGATTAAGAAGGATGAAAATTCAACTGAGAAGGGGAAGAAGAGAATCAGAACCAAGTTCACACAAGAACAGAAGGAGAAGTTGCTGTGTTTTGCAGAAAAGGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTAGTGCAGAAGTTTTGCAAAGAGATTGGAATCAAGAGAAGAGTCCTCAAAGTGTGGATGCAAAATAACAAGAACACTTTTGCCAAGAGAAATCTCTCTACTAGCTTGCTAGGATGA 612 0.4036 MESNNFHVDKKPEKKVIRYKECLKNHAAAIGGNATDGCGEFLPVGEEGTLEALKCSACICHRNFHRKEIDSDSNCPSQHYVLSLIPDTTTQTNPILAHLFPNKSGSISPSDHSDEKDYEDGIKKDENSTEKGKKRIRTKFTQEQKEKLLCFAEKAGWRIQKLDESVVQKFCKEIGIKRRVLKVWMQNNKNTFAKRNLSTSLLG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4816g00003 203 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 191 - -
Gabi4816g00003 203 NCBIfam homeobox domain, ZF-HD class 133 190 IPR006455 -
Gabi4816g00003 203 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Gabi4816g00003 203 Gene3D - 119 194 - -
Gabi4816g00003 203 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
Gabi4816g00003 203 ProSiteProfiles 'Homeobox' domain profile. 131 195 IPR001356 GO:0003677
Gabi4816g00003 203 SUPERFAMILY Homeodomain-like 123 194 IPR009057 -
Gabi4816g00003 203 MobiDBLite consensus disorder prediction 100 136 - -
Gabi4816g00003 203 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Gabi4816g00003 203 MobiDBLite consensus disorder prediction 109 136 - -
Gabi4816g00003 203 FunFam Zinc-finger homeodomain protein 2 121 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4816g00003 Gabi-Chr4816 104179 104790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4816g00003 14 196 ZF-HD Transcription Factor Family AT1G14440 50.761 1.33e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi4816g00003 ZF-HD_dimer 3.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4816g00003 - - gmx:100793926 306.99