Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4816g00001 ATGGAGAATCATTTGATGGATGAAAATAGGACAATATACCCTTTTCCCATGGGTATGCATGTTCTAGTTGTTGACGATGATCAGTTTTGTCTTAAAGTGTTGGAGAACATGCTTCGCAAATGCGAGTATCGTGTTACTACAACTACTCAATCAACTGAGGCGCTAGAAATGTTGAGGGAAAATAGAAATAAATTTGACCTTATTATTACTAACGTAAATATGCCACACATGGATGGATTTAAGCTCCTTGAGATAGTGGGACTTGAAATGGACATACCAGTCATCTTGTTGTCAGAATACAGTGACAAAGAGCAAGTGAAGAAAGGTGTTATACATGGCGCATGTGACTATTTAATTAAACCTCCTCGAATTGAAGTGCTGCAGAACATATGGCAACATGTGGTGCGAAGAAAGATTAATTGCAAGGATCAGAATAAGTCCCCAAATGAGGAGAAATCCTGCAATATAGACAGGGAAGGCAGTCAAGGCATTTCATTAGAAAATAATGTTGACCATGATAAAATATTGGGTCAAAAAAGGAAGGAACCAAGTGAGGAAGAAGAAGAAGATGAAGAAGATAATGAAAAAGAGACTGTAGAAGCTTCAACTAAAAAGAGGCCTCGTTTAAATTGGAATACTAATTTGCATACAAAATTTCTTGTTGCAGTTAATCAATTGGGCGTTAATAAAGCTGTTCCTAAGAAAATACTTCACTTGATGAATGTTGAAGGTCTTACAAGAGAAAATATTGCAAGCCATCTACAGAAATATAGACTTGCCCTTAAGAAGGAAACTCAACAAGCTAGCACAATTCTTGCATTTGGTCGTAGTAATCCTCACATGCAGATGAGTTCAATAGATACATATGGAGATTTTAGCACATCGTCTGTATCAGGAAGAATCTTAAACACTACACAACCTTTAAATGCATTGGGTGGAAATTTCTGTAACCTGAACTCCCCATCTGGCTTGAACTGGAGAGAAATTAGTTCCTCTACGCTAATCCAGCCTGTTCAGTCACAAAATATAAATAGCTCCATCAAAACACTTGGAAACATCCAGTTGCCCAAGTTTTCTACAAATCAAAGCTCAAGTTTATCACATGGCATTCCGAAATCAAATGAGCTTAACCAATTCAAGCAGTGCAACTGTACAACTAGTATTAGGCAATTTAATCCAATTAGTGGGTTAAGTGAATTTATGGGTTCATCTGACTTTCATGACAACTCTTCTCCTTCTGGTGAGGTTTTATACAATGATAAACAACCTCATAATAGCTTGAATTTTTCCTCCTCGGCTTATCATACAGACAACAATCTAGTTGATTTTTCTTCCACAAGTGATGTTGCAATTCCTTTGGAGGATGCTAAAAGAAGGAAGCTGCATTGCCAATTGAATGAGGACCCTAGTTCATTGGGGCATAGTTTAGACCAAAATAATACAGTTTGCAGCAAGAGAATTAATGCATCATTGGTTGTCCAATCGAATGAGGCTACTCCATTAATCACTCATTCTGCAGAAGTTGAGAAATTCTATTTTGAGGAAAGAATAATGTCAAATGATGCCTACATTTCGCAGCGAACAATGCCCCAAGAAGAACCTGTTGAGGAGGATATTTTTGGGTCTTTGGATGATATAAATAATGGTAGGATCTAA 1656 0.3714 MENHLMDENRTIYPFPMGMHVLVVDDDQFCLKVLENMLRKCEYRVTTTTQSTEALEMLRENRNKFDLIITNVNMPHMDGFKLLEIVGLEMDIPVILLSEYSDKEQVKKGVIHGACDYLIKPPRIEVLQNIWQHVVRRKINCKDQNKSPNEEKSCNIDREGSQGISLENNVDHDKILGQKRKEPSEEEEEDEEDNEKETVEASTKKRPRLNWNTNLHTKFLVAVNQLGVNKAVPKKILHLMNVEGLTRENIASHLQKYRLALKKETQQASTILAFGRSNPHMQMSSIDTYGDFSTSSVSGRILNTTQPLNALGGNFCNLNSPSGLNWREISSSTLIQPVQSQNINSSIKTLGNIQLPKFSTNQSSSLSHGIPKSNELNQFKQCNCTTSIRQFNPISGLSEFMGSSDFHDNSSPSGEVLYNDKQPHNSLNFSSSAYHTDNNLVDFSSTSDVAIPLEDAKRRKLHCQLNEDPSSLGHSLDQNNTVCSKRINASLVVQSNEATPLITHSAEVEKFYFEERIMSNDAYISQRTMPQEEPVEEDIFGSLDDINNGRI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4816g00001 551 MobiDBLite consensus disorder prediction 142 205 - -
Gabi4816g00001 551 Pfam Myb-like DNA-binding domain 209 258 IPR001005 -
Gabi4816g00001 551 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Gabi4816g00001 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 259 IPR006447 GO:0003677
Gabi4816g00001 551 SMART REC_2 19 131 IPR001789 GO:0000160
Gabi4816g00001 551 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Gabi4816g00001 551 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Gabi4816g00001 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Gabi4816g00001 551 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 339 IPR045279 GO:0009736
Gabi4816g00001 551 SUPERFAMILY CheY-like 18 142 IPR011006 -
Gabi4816g00001 551 FunFam Two-component response regulator 202 265 - -
Gabi4816g00001 551 Gene3D - 202 264 - -
Gabi4816g00001 551 MobiDBLite consensus disorder prediction 142 157 - -
Gabi4816g00001 551 CDD REC_typeB_ARR-like 21 135 - -
Gabi4816g00001 551 PIRSF RR_ARR_type-B 3 544 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gabi4816g00001 551 Gene3D - 19 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4816g00001 Gabi-Chr4816 77064 81627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4816g00001 15 383 Response Regulator Gene Family AT2G25180 44.355 3.22e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi4816g00001 Response_reg 9.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4816g00001 K14491 - qsa:O6P43_022161 477.633